Y3158_ARATH
ID Y3158_ARATH Reviewed; 267 AA.
AC Q8RYD3; A0A1I9LT58; Q3EB83; Q9CAX0;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 25-MAY-2022, entry version 110.
DE RecName: Full=B3 domain-containing protein At3g11580;
DE AltName: Full=Protein AUXIN RESPONSE FACTOR 32;
GN Name=ARF32; OrderedLocusNames=At3g11580; ORFNames=F24K9.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., Ruberti I.;
RT "Nucleotide sequence of the putative Arabidopsis ARF32.";
RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q8RYD3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8RYD3-2; Sequence=VSP_037334, VSP_037335;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to an intron retention.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51450.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AJ441076; CAD29644.1; -; mRNA.
DR EMBL; AC008153; AAG51450.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE75068.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75069.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65766.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65767.1; -; Genomic_DNA.
DR EMBL; AK175281; BAD43044.1; -; mRNA.
DR EMBL; BT029371; ABK32185.1; -; mRNA.
DR RefSeq; NP_001319524.1; NM_001337938.1. [Q8RYD3-2]
DR RefSeq; NP_001327713.1; NM_001337940.1. [Q8RYD3-2]
DR RefSeq; NP_187765.2; NM_111991.5. [Q8RYD3-1]
DR RefSeq; NP_850559.1; NM_180228.3. [Q8RYD3-2]
DR AlphaFoldDB; Q8RYD3; -.
DR SMR; Q8RYD3; -.
DR BioGRID; 5665; 18.
DR IntAct; Q8RYD3; 18.
DR STRING; 3702.AT3G11580.1; -.
DR PaxDb; Q8RYD3; -.
DR EnsemblPlants; AT3G11580.1; AT3G11580.1; AT3G11580. [Q8RYD3-1]
DR EnsemblPlants; AT3G11580.2; AT3G11580.2; AT3G11580. [Q8RYD3-2]
DR EnsemblPlants; AT3G11580.4; AT3G11580.4; AT3G11580. [Q8RYD3-2]
DR EnsemblPlants; AT3G11580.5; AT3G11580.5; AT3G11580. [Q8RYD3-2]
DR GeneID; 820331; -.
DR Gramene; AT3G11580.1; AT3G11580.1; AT3G11580. [Q8RYD3-1]
DR Gramene; AT3G11580.2; AT3G11580.2; AT3G11580. [Q8RYD3-2]
DR Gramene; AT3G11580.4; AT3G11580.4; AT3G11580. [Q8RYD3-2]
DR Gramene; AT3G11580.5; AT3G11580.5; AT3G11580. [Q8RYD3-2]
DR KEGG; ath:AT3G11580; -.
DR Araport; AT3G11580; -.
DR TAIR; locus:2080782; AT3G11580.
DR eggNOG; ENOG502R9U7; Eukaryota.
DR HOGENOM; CLU_038898_3_1_1; -.
DR InParanoid; Q8RYD3; -.
DR OMA; HHNEHKE; -.
DR PhylomeDB; Q8RYD3; -.
DR PRO; PR:Q8RYD3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q8RYD3; baseline and differential.
DR Genevisible; Q8RYD3; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IPI:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0019760; P:glucosinolate metabolic process; IMP:TAIR.
DR GO; GO:0080113; P:regulation of seed growth; IMP:TAIR.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..267
FT /note="B3 domain-containing protein At3g11580"
FT /id="PRO_0000375137"
FT DNA_BIND 29..143
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT VAR_SEQ 194..230
FT /note="AVVDHAQSIPPVVAGSSRTVRLFGVNLECHGDAVEPP -> KFKPFISSFVF
FT SFSLIYMSDLYSSLFSFKICLFHKNR (in isoform 2)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_037334"
FT VAR_SEQ 231..267
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_037335"
SQ SEQUENCE 267 AA; 30217 MW; D3FFC59FF28EE865 CRC64;
MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN
NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLDAG
DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST
TYPNIHQEYS HYGAVVDHAQ SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH
IYYYSTPHPM NISFAGEALE QVGDGRG
