Y3204_ORYSJ
ID Y3204_ORYSJ Reviewed; 519 AA.
AC Q851W5; Q10GN6;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=B3 domain-containing protein Os03g0620400;
GN OrderedLocusNames=Os03g0620400, LOC_Os03g42280;
GN ORFNames=OsJ_11757, OSJNBb0111B07.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q851W5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q851W5-2; Sequence=VSP_037441, VSP_037442;
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC097280; AAO34490.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97664.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97665.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12589.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85303.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ27810.1; -; Genomic_DNA.
DR EMBL; AK102169; BAG95422.1; -; mRNA.
DR RefSeq; XP_015628610.1; XM_015773124.1. [Q851W5-1]
DR RefSeq; XP_015628611.1; XM_015773125.1. [Q851W5-1]
DR AlphaFoldDB; Q851W5; -.
DR SMR; Q851W5; -.
DR STRING; 4530.OS03T0620400-01; -.
DR PaxDb; Q851W5; -.
DR PRIDE; Q851W5; -.
DR EnsemblPlants; Os03t0620400-01; Os03t0620400-01; Os03g0620400. [Q851W5-2]
DR GeneID; 4333466; -.
DR Gramene; Os03t0620400-01; Os03t0620400-01; Os03g0620400. [Q851W5-2]
DR KEGG; osa:4333466; -.
DR eggNOG; ENOG502QSIS; Eukaryota.
DR InParanoid; Q851W5; -.
DR OMA; HNAKFIF; -.
DR OrthoDB; 858776at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 3.
DR Gene3D; 2.40.330.10; -; 3.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044837; REM16-like.
DR PANTHER; PTHR31391; PTHR31391; 2.
DR Pfam; PF02362; B3; 3.
DR SMART; SM01019; B3; 3.
DR SUPFAM; SSF101936; SSF101936; 3.
DR PROSITE; PS50863; B3; 3.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..519
FT /note="B3 domain-containing protein Os03g0620400"
FT /id="PRO_0000376955"
FT DNA_BIND 26..119
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 249..349
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 416..516
FT /note="TF-B3 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 138..218
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 138..193
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..203
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_037441"
FT VAR_SEQ 204..265
FT /note="SYELDDPQMPPGRNYVLSRWTSLSEAQEEKVDMLVQDIQPEIPVFVAIMKHS
FT NVNSRRACLV -> MNCAWCMVSCTICSLFLSVEKAVKFALVYRPLHNAKFIFSFLYFT
FT SQKYIYSIIFCLDQV (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_037442"
SQ SEQUENCE 519 AA; 59045 MW; E3F19E85033138D2 CRC64;
MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE
LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG
CEKVFTCAGI KKTSSVQERN AAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL
AETSSSGESG EEGTDSSTSE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD
IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR
KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS
HKRFDLRDGR TWPKVTGVRR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM
NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW
RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS
