Y3209_ORYSJ
ID Y3209_ORYSJ Reviewed; 311 AA.
AC Q8LMR9; A0A0P0VSB0;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=B3 domain-containing protein Os03g0120900;
GN OrderedLocusNames=Os03g0120900, LOC_Os03g02900; ORFNames=OJ1705B08.4;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
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DR EMBL; AC105363; AAM52315.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF93697.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10706.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82026.1; -; Genomic_DNA.
DR EMBL; AK106367; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015628752.1; XM_015773266.1.
DR AlphaFoldDB; Q8LMR9; -.
DR SMR; Q8LMR9; -.
DR STRING; 4530.OS03T0120900-01; -.
DR PaxDb; Q8LMR9; -.
DR PRIDE; Q8LMR9; -.
DR EnsemblPlants; Os03t0120900-01; Os03t0120900-01; Os03g0120900.
DR GeneID; 4331436; -.
DR Gramene; Os03t0120900-01; Os03t0120900-01; Os03g0120900.
DR KEGG; osa:4331436; -.
DR eggNOG; ENOG502QSHQ; Eukaryota.
DR HOGENOM; CLU_038898_3_3_1; -.
DR InParanoid; Q8LMR9; -.
DR OMA; SSMERND; -.
DR OrthoDB; 661086at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q8LMR9; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 2.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..311
FT /note="B3 domain-containing protein Os03g0120900"
FT /id="PRO_0000378049"
FT DNA_BIND 37..142
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 275..311
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 3
FT /note="F -> S (in Ref. 5; AK106367)"
FT /evidence="ECO:0000305"
FT CONFLICT 62
FT /note="Y -> H (in Ref. 5; AK106367)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 311 AA; 33772 MW; 8938BC6AD0D0DC51 CRC64;
MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE
KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV
SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA
AAAAGARFLL PPSSTPIYDH HRRHAHAVGY DAYAAATSRQ VLFYRPLPPQ QQHHPAVVLE
SVPVRMTAGH AEPPSAPSKR VRLFGVNLDC ANSEQDHAGV VGKTAPPPLP SPPSSSSSSS
GKARCSLNLD L
