Y3216_ORYSJ
ID Y3216_ORYSJ Reviewed; 1029 AA.
AC Q851V5;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 25-MAY-2022, entry version 95.
DE RecName: Full=Putative B3 domain-containing protein Os03g0621600;
GN OrderedLocusNames=Os03g0621600, LOC_Os03g42370; ORFNames=OSJNBb0111B07.17;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF12593.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC097280; AAO34491.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97673.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12593.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; Q851V5; -.
DR SMR; Q851V5; -.
DR STRING; 4530.OS03T0621600-00; -.
DR PaxDb; Q851V5; -.
DR PRIDE; Q851V5; -.
DR eggNOG; ENOG502QT0X; Eukaryota.
DR InParanoid; Q851V5; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 5.
DR Gene3D; 2.40.330.10; -; 6.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 5.
DR SMART; SM01019; B3; 5.
DR SUPFAM; SSF101936; SSF101936; 5.
DR PROSITE; PS50863; B3; 5.
PE 3: Inferred from homology;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..1029
FT /note="Putative B3 domain-containing protein Os03g0621600"
FT /id="PRO_0000378050"
FT DNA_BIND 147..240
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 339..430
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 450..543
FT /note="TF-B3 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 731..824
FT /note="TF-B3 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 934..1029
FT /note="TF-B3 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 572..605
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 852..882
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 590..605
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 855..871
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1029 AA; 118190 MW; 206B6AD0CA4B7645 CRC64;
MAPFLASPIR LHPCPLLFSH PHLFGSDYFA FSVKGRGAHL ESMRVENKRG NRSWGTDAKR
THPNSIFNQL VRYGYIGTGF PDMNCSLTWS LIGGPSTLSL PSFFPSAHLL LSLALFFFLC
IQSNHRMSKS GCERCRGRGF WDTDDQDTYF FKVMIGGFRR QMTIPYKFAE NFRDQIQGTI
KLKARNGNTC SVLVDKCSNK LVLTKGWAEF ANSHDIKMGD FLVFRYTGNS QFEVKIFDPS
GCVKAASHNA VNIGQHAQNM QGDPIEILSC SDEHLRAQSL TTERQNQPEK DVIDNCNKKM
KTEHASSSED DQETPTAEVH RMKVEEMVRA IHSNHPVFVA VMKKSNVTRQ PCYVAISRKY
ANEYFPGGDQ MLTLQRHGKR WQVKFCISKR KLRMLSKGWR KFTRDNELQH WAPLALFITL
FFSPHFRKMK KCGQKMRKLN TRSTARDDQE KYFFKVMIGD FHKRMTIPDK FARHFKGVIS
KTIKLEPRSG YTFDVQVTKK LNILVLGSGW ESFVNAHDLN MGDFLVFKYN GDFLLQVLIF
DPSGCEKSTS CSMENAIDHV GQGWKEHNDI STSYHDQPKG NKHWMQKDSS SKGNKIGNTR
SSNTPSKFSG CILPRGTCLP VVQEKKMKEK IQAIHSKTPM YGNVMTKCNV SGSPCVLEIT
QLYDDAYLPF NNGQELMLRH RDKSWKVRFY RFKNKSRKLT QASSLYKMRR PGARCREGHA
HFNGNHIDGQ YKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTIKLQLRD GCTYDVQVTK
NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISKLKVLI FGPSGCEKVH SRSTLKNATH
CGEKWEEPLH ISSNSHDLPV KSPQNVSKSE KQWDSSEQEN DTANIEEVAL QGDDLQGHPV
LNCILPKHTR LTDMQKQQLE SKVGAIHSEI PIYGCILRKS RVHGKSQTVD ICREYADVYL
PFKELNMTLQ RHGKNWEVLC RTKDTRTKRL STGWSRFAQE NNLQVGDICL FELLKKKEYS
MNVHIIPKK