Y3304_ARATH
ID Y3304_ARATH Reviewed; 479 AA.
AC Q9LF88;
DT 15-FEB-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Late embryogenesis abundant protein At3g53040 {ECO:0000305};
DE AltName: Full=LEA domain-containing protein At3g53040 {ECO:0000305};
GN OrderedLocusNames=At3g53040 {ECO:0000312|Araport:AT3G53040};
GN ORFNames=F8J2_210 {ECO:0000312|EMBL:CAB86908.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=22992509; DOI=10.1104/pp.112.205955;
RA Gonzalez-Carranza Z.H., Shahid A.A., Zhang L., Liu Y., Ninsuwan U.,
RA Roberts J.A.;
RT "A novel approach to dissect the abscission process in Arabidopsis.";
RL Plant Physiol. 160:1342-1356(2012).
RN [5]
RP FUNCTION.
RX PubMed=25809152; DOI=10.1007/s00425-015-2283-7;
RA Costa M.C., Righetti K., Nijveen H., Yazdanpanah F., Ligterink W.,
RA Buitink J., Hilhorst H.W.;
RT "A gene co-expression network predicts functional genes controlling the re-
RT establishment of desiccation tolerance in germinated Arabidopsis thaliana
RT seeds.";
RL Planta 242:435-449(2015).
CC -!- FUNCTION: May function in the proximal abscission zone cells to prevent
CC water loss after floral organ shedding (Probable). May be involved in
CC the reestablishment of desiccation tolerance in germinated seeds
CC (Probable). {ECO:0000305|PubMed:22992509, ECO:0000305|PubMed:25809152}.
CC -!- TISSUE SPECIFICITY: Highly expressed in the epidermal abscission zone
CC cells from flowers and siliques. Expressed in roots, vasculature of
CC cotyledons and leaves, stigmas, anther filaments and pollen grains.
CC {ECO:0000269|PubMed:22992509}.
CC -!- SIMILARITY: Belongs to the LEA type 4 family. {ECO:0000305}.
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DR EMBL; AL132969; CAB86908.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79028.1; -; Genomic_DNA.
DR EMBL; AY072100; AAL59922.1; -; mRNA.
DR EMBL; AY096471; AAM20111.1; -; mRNA.
DR PIR; T47561; T47561.
DR RefSeq; NP_190872.1; NM_115164.3.
DR AlphaFoldDB; Q9LF88; -.
DR SMR; Q9LF88; -.
DR STRING; 3702.AT3G53040.1; -.
DR PaxDb; Q9LF88; -.
DR PRIDE; Q9LF88; -.
DR ProteomicsDB; 234657; -.
DR EnsemblPlants; AT3G53040.1; AT3G53040.1; AT3G53040.
DR GeneID; 824470; -.
DR Gramene; AT3G53040.1; AT3G53040.1; AT3G53040.
DR KEGG; ath:AT3G53040; -.
DR Araport; AT3G53040; -.
DR TAIR; locus:2085171; AT3G53040.
DR eggNOG; ENOG502R2QW; Eukaryota.
DR HOGENOM; CLU_058121_0_0_1; -.
DR InParanoid; Q9LF88; -.
DR OMA; CKIDETK; -.
DR OrthoDB; 1231363at2759; -.
DR PhylomeDB; Q9LF88; -.
DR PRO; PR:Q9LF88; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LF88; baseline and differential.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0010227; P:floral organ abscission; IEP:TAIR.
DR InterPro; IPR004238; LEA_4.
DR Pfam; PF02987; LEA_4; 6.
PE 2: Evidence at transcript level;
KW Coiled coil; Reference proteome.
FT CHAIN 1..479
FT /note="Late embryogenesis abundant protein At3g53040"
FT /id="PRO_0000438827"
FT REGION 71..169
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 210..237
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 310..433
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 318..356
FT /evidence="ECO:0000255"
FT COMPBIAS 316..383
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 479 AA; 52084 MW; C39E000D910E2385 CRC64;
MASGQREAER SAKAERAEAA ASLAAEDLKD INKGDVTYKL TERTTTTEPE RPGLIGSVMK
AVQGTKDAVI GKSHDTAEST REGADIASEK AAGMRDTTGE VRDSTAQKTK ETADYTADKA
REAKDKTADK TKETADYAAE KAREAKDRTA DKTKETAEYT AEKAREAKDK TADKLGEYKD
YTAEKAKEAK DTTAEKLGEY KDYTVDKAKE AKDKTAEKAK ETAEYTSDKA RETKDKTAEK
VGEYKDYTAE KAKETADKAR EAKDKTAEKV GEYRDYTAEK ATETKDAGVS KIGELKDSAV
DTAKRAMGFL SGKTEETKQK AVETKDTAKE KMDEAGEEAR RKMEEMRLEG KKLDEDASRK
TQQSTESAAD KAHETKDSVA QRGEEGKGSI MGALGNMTGA IKSKLTGATT PSDEETRASA
HGDESTGKTV VAVDVKDTRP GYVATVLKEA DQMTGQTFND VGEIDDEEKV RIVVGEKKL
