Y3440_ARATH
ID Y3440_ARATH Reviewed; 397 AA.
AC Q9SZ05; C0SVL4;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 26-MAY-2009, sequence version 2.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=B3 domain-containing protein At4g34400;
GN OrderedLocusNames=At4g34400; ORFNames=F10M10.170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB36717.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB80157.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL035521; CAB36717.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161585; CAB80157.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE86368.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67235.1; -; Genomic_DNA.
DR EMBL; AB493717; BAH30555.1; -; mRNA.
DR PIR; T04786; T04786.
DR RefSeq; NP_001320135.1; NM_001342283.1.
DR RefSeq; NP_195166.2; NM_119605.3.
DR AlphaFoldDB; Q9SZ05; -.
DR SMR; Q9SZ05; -.
DR BioGRID; 14872; 7.
DR IntAct; Q9SZ05; 7.
DR STRING; 3702.AT4G34400.1; -.
DR iPTMnet; Q9SZ05; -.
DR PaxDb; Q9SZ05; -.
DR PRIDE; Q9SZ05; -.
DR EnsemblPlants; AT4G34400.1; AT4G34400.1; AT4G34400.
DR EnsemblPlants; AT4G34400.2; AT4G34400.2; AT4G34400.
DR GeneID; 829590; -.
DR Gramene; AT4G34400.1; AT4G34400.1; AT4G34400.
DR Gramene; AT4G34400.2; AT4G34400.2; AT4G34400.
DR KEGG; ath:AT4G34400; -.
DR Araport; AT4G34400; -.
DR TAIR; locus:2116219; AT4G34400.
DR eggNOG; ENOG502S4ID; Eukaryota.
DR HOGENOM; CLU_048511_1_1_1; -.
DR InParanoid; Q9SZ05; -.
DR OMA; VYAIKLH; -.
DR OrthoDB; 1126273at2759; -.
DR PhylomeDB; Q9SZ05; -.
DR PRO; PR:Q9SZ05; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SZ05; baseline and differential.
DR Genevisible; Q9SZ05; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..397
FT /note="B3 domain-containing protein At4g34400"
FT /id="PRO_0000375138"
FT DNA_BIND 14..107
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 118..255
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 137..161
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 162..183
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 212..228
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 397 AA; 45678 MW; 0DAE5AD3453F35DB CRC64;
MASSMASNDF QLPPRFFTVF VSHFSSEFMV IPVSYYDHIP HRFPKTVILR GPGGCSWKVA
TEIKDDEVLF SQGWPKFVRD NTLNDGDFLT FAYNGAHIFE VSIFRGYDAC KEISEVTELE
EEEEDSVISL SSEDTDTGAK SEMKNTVPEG RDKGKSKVEV VEDSDDDEEE DSVYSESSEE
TETDTDSEFK VAKPTIPKSQ KKGKKKEQVV ESSDDEEDEE EDSDSDYIET FGQLDIEENS
ISEEDSSYAP DKEDTATASF VKPKVANKVA NLKRKEAAKK RKKVDPMIKN PERYLDDPKN
IHFETNVKNR LYELLVHAQL VKDYCLRFGD YVNYIDRFGK LSAKTAKWKD QRVCIKRWMR
ICKRNKLKKE DRILCELLRK GTFVYAIKLH VIRGKDL
