Y3473_ARATH
ID Y3473_ARATH Reviewed; 387 AA.
AC P0DKG2; F4JE11; Q9M1S7;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 09-JUL-2014, sequence version 1.
DT 03-AUG-2022, entry version 54.
DE RecName: Full=Putative transmembrane protein At3g54730;
GN OrderedLocusNames=At3g54730; ORFNames=T5N23.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=P0DKG2-1; Sequence=Displayed;
CC Name=2;
CC IsoId=P0DKG2-2; Sequence=VSP_055038;
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DR EMBL; AL138650; CAB77593.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79271.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79272.1; -; Genomic_DNA.
DR EMBL; DQ446766; ABE65504.1; -; Genomic_DNA.
DR PIR; T47632; T47632.
DR RefSeq; NP_001154676.1; NM_001161204.2. [P0DKG2-2]
DR RefSeq; NP_191033.1; NM_115330.2. [P0DKG2-1]
DR RefSeq; NP_192312.4; NM_116641.4. [P0DKG2-2]
DR AlphaFoldDB; P0DKG2; -.
DR BioGRID; 11028; 7.
DR IntAct; P0DKG2; 7.
DR PaxDb; P0DKG2; -.
DR PRIDE; P0DKG2; -.
DR EnsemblPlants; AT3G54730.1; AT3G54730.1; AT3G54730. [P0DKG2-1]
DR EnsemblPlants; AT3G54730.2; AT3G54730.2; AT3G54730.
DR EnsemblPlants; AT4G04030.1; AT4G04030.1; AT4G04030.
DR GeneID; 824638; -.
DR GeneID; 825715; -.
DR Gramene; AT3G54730.1; AT3G54730.1; AT3G54730. [P0DKG2-1]
DR Gramene; AT3G54730.2; AT3G54730.2; AT3G54730.
DR Gramene; AT4G04030.1; AT4G04030.1; AT4G04030.
DR KEGG; ath:AT3G54730; -.
DR KEGG; ath:AT4G04030; -.
DR Araport; AT3G54730; -.
DR TAIR; locus:2102475; AT3G54730.
DR HOGENOM; CLU_759438_0_0_1; -.
DR OMA; FFRAFRM; -.
DR OrthoDB; 1099936at2759; -.
DR PRO; PR:P0DKG2; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; P0DKG2; differential.
DR Genevisible; P0DKG2; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
PE 4: Predicted;
KW Alternative splicing; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..387
FT /note="Putative transmembrane protein At3g54730"
FT /id="PRO_0000429688"
FT TRANSMEM 97..117
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 128..148
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 154..174
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 186..206
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 221..241
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 292..312
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 335..355
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 362..382
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 10..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 12..26
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 129..387
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_055038"
SQ SEQUENCE 387 AA; 44157 MW; ABFC81BDB3C0B4FD CRC64;
MALVMLARAP APPLLLPSPN PPPCALPQDL TSLVSPSEPP DPPDPPDYLV GASNSFLSIL
LLRSSDLGSD LVQALSPLDL GFALRSITAV CSSWYQVFPL ACLELWFSIP HLSHPLVTLS
KGFVSLKGSN FFEFFTFFWN MPSFILQFPH HEDVMISTSF RLVLPQYEAV MILLKLKLFL
PHYEDVLFSI GLRIQLLLPQ YEVGLILYKL RLLLPHYEDV IQKLWLRAIH VIVSLVWFLE
ISRRIKEKTY DVLTRNDLGS WTPDLFIEKW WFSQPHTSPK LRFFSHLVGS RSWCFVAYAI
VAVFHDAFYP LEDVASPDSR SPSVLSYFRK LISCFSTIGV SNFSCLTVMY VFIFFFRAFR
MPFVAVVSLA FVASLMYLLN HFSIVGE
