Y3572_ARATH
ID Y3572_ARATH Reviewed; 158 AA.
AC Q5BPN1; Q6DYC1; Q9M2M6;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 12-APR-2005, sequence version 1.
DT 03-AUG-2022, entry version 75.
DE RecName: Full=UPF0725 protein At3g57210;
GN OrderedLocusNames=At3g57210; ORFNames=F28O9.60;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q5BPN1-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q5BPN1-2; Sequence=VSP_036244;
CC -!- SIMILARITY: Belongs to the UPF0725 (EMB2204) family. {ECO:0000305}.
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DR EMBL; AL137080; CAB68127.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79627.1; -; Genomic_DNA.
DR EMBL; AY630783; AAT67582.1; -; mRNA.
DR EMBL; AY630784; AAT67583.1; -; mRNA.
DR EMBL; AY924797; AAX23872.1; -; mRNA.
DR PIR; T45799; T45799.
DR RefSeq; NP_191280.4; NM_115581.4. [Q5BPN1-1]
DR AlphaFoldDB; Q5BPN1; -.
DR SMR; Q5BPN1; -.
DR PaxDb; Q5BPN1; -.
DR PRIDE; Q5BPN1; -.
DR EnsemblPlants; AT3G57210.1; AT3G57210.1; AT3G57210. [Q5BPN1-1]
DR GeneID; 824888; -.
DR Gramene; AT3G57210.1; AT3G57210.1; AT3G57210. [Q5BPN1-1]
DR KEGG; ath:AT3G57210; -.
DR Araport; AT3G57210; -.
DR TAIR; locus:2082588; AT3G57210.
DR HOGENOM; CLU_053767_0_2_1; -.
DR OrthoDB; 924412at2759; -.
DR PhylomeDB; Q5BPN1; -.
DR PRO; PR:Q5BPN1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q5BPN1; baseline and differential.
DR Genevisible; Q5BPN1; AT.
DR InterPro; IPR006462; MS5.
DR PANTHER; PTHR31260; PTHR31260; 1.
DR Pfam; PF04776; protein_MS5; 1.
DR TIGRFAMs; TIGR01572; A_thl_para_3677; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..158
FT /note="UPF0725 protein At3g57210"
FT /id="PRO_0000363118"
FT VAR_SEQ 1..49
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_036244"
FT CONFLICT 115..116
FT /note="TM -> KG (in Ref. 3; AAT67583)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 158 AA; 18292 MW; EDA5C37397503EB9 CRC64;
MQPSSGRRFT FQTSVYEEAC GRLVLTSFIA ERRRPGTIIK TSLEREFYRM GSLPEFPLEN
PFENRNRFYV VDDESELRAN DWIRLYLELS VAISDRTTTD HDLSGLRIVS VAIQTMEPPS
ESSLTAKNAT VYIRYIDFCK ARCGQNLDRI AVVRRNLQ