Y3634_SHEB5
ID Y3634_SHEB5 Reviewed; 224 AA.
AC A3D8P6;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 03-AUG-2022, entry version 85.
DE RecName: Full=PKHD-type hydroxylase Sbal_3634 {ECO:0000255|HAMAP-Rule:MF_00657};
DE EC=1.14.11.- {ECO:0000255|HAMAP-Rule:MF_00657};
GN OrderedLocusNames=Sbal_3634;
OS Shewanella baltica (strain OS155 / ATCC BAA-1091).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=325240;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=OS155 / ATCC BAA-1091;
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Brettar I.,
RA Klappenbach J., Konstantinidis K., Rodrigues J., Tiedje J., Richardson P.;
RT "Complete sequence of chromosome of Shewanella baltica OS155.";
RL Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00657};
CC Note=Binds 1 Fe(2+) ion per subunit. {ECO:0000255|HAMAP-Rule:MF_00657};
CC -!- COFACTOR:
CC Name=L-ascorbate; Xref=ChEBI:CHEBI:38290;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00657};
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DR EMBL; CP000563; ABN63109.1; -; Genomic_DNA.
DR RefSeq; WP_011847807.1; NC_009052.1.
DR PDB; 3DKQ; X-ray; 2.26 A; A/B/C=1-224.
DR PDBsum; 3DKQ; -.
DR AlphaFoldDB; A3D8P6; -.
DR SMR; A3D8P6; -.
DR STRING; 325240.Sbal_3634; -.
DR EnsemblBacteria; ABN63109; ABN63109; Sbal_3634.
DR KEGG; sbl:Sbal_3634; -.
DR HOGENOM; CLU_106663_0_0_6; -.
DR OMA; FPPLFNC; -.
DR EvolutionaryTrace; A3D8P6; -.
DR Proteomes; UP000001557; Chromosome.
DR GO; GO:0016706; F:2-oxoglutarate-dependent dioxygenase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0031418; F:L-ascorbic acid binding; IEA:UniProtKB-KW.
DR HAMAP; MF_00657; Hydroxyl_YbiX; 1.
DR InterPro; IPR005123; Oxoglu/Fe-dep_dioxygenase.
DR InterPro; IPR041097; PKHD_C.
DR InterPro; IPR023550; PKHD_hydroxylase.
DR InterPro; IPR006620; Pro_4_hyd_alph.
DR InterPro; IPR044862; Pro_4_hyd_alph_FE2OG_OXY.
DR PANTHER; PTHR41536; PTHR41536; 1.
DR Pfam; PF13640; 2OG-FeII_Oxy_3; 1.
DR Pfam; PF18331; PKHD_C; 1.
DR SMART; SM00702; P4Hc; 1.
DR PROSITE; PS51471; FE2OG_OXY; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Dioxygenase; Iron; Metal-binding; Oxidoreductase; Vitamin C.
FT CHAIN 1..224
FT /note="PKHD-type hydroxylase Sbal_3634"
FT /id="PRO_1000061739"
FT DOMAIN 78..176
FT /note="Fe2OG dioxygenase"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00657"
FT BINDING 96
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00657"
FT BINDING 98
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00657"
FT BINDING 157
FT /ligand="Fe cation"
FT /ligand_id="ChEBI:CHEBI:24875"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00657"
FT BINDING 167
FT /ligand="2-oxoglutarate"
FT /ligand_id="ChEBI:CHEBI:16810"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00657"
FT STRAND 2..5
FT /evidence="ECO:0007829|PDB:3DKQ"
FT HELIX 11..22
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 27..29
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 33..37
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 41..45
FT /evidence="ECO:0007829|PDB:3DKQ"
FT HELIX 51..65
FT /evidence="ECO:0007829|PDB:3DKQ"
FT HELIX 68..74
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 76..87
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 92..96
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 100..104
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 107..110
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 113..118
FT /evidence="ECO:0007829|PDB:3DKQ"
FT HELIX 122..124
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 125..127
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 130..134
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 137..141
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 148..152
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 155..159
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 162..165
FT /evidence="ECO:0007829|PDB:3DKQ"
FT STRAND 167..177
FT /evidence="ECO:0007829|PDB:3DKQ"
FT HELIX 181..199
FT /evidence="ECO:0007829|PDB:3DKQ"
FT HELIX 204..221
FT /evidence="ECO:0007829|PDB:3DKQ"
SQ SEQUENCE 224 AA; 25313 MW; AEB0F62741DAE653 CRC64;
MLIEIPNVFS KQEVSHLREQ LDARRWIDGN QTSGAMATTR KRNQQLDKDD PVAVALGQQI
MDRLLAHPQF VSAALPLQFY PPLFNRYQGG ETFGYHIDNA IRSTPDGMIR TDLSATLFLS
EPENYQGGEL VIQDTYGQQS IKLSAGSLVL YPSSSLHQVT PVLSGERTAA FMWLQSMVRD
EGQRRLLFQL DQSIQSLTAQ TAAEQELFNL SGVYHNLLRR WSEL
