Y3911_AGRFC
ID Y3911_AGRFC Reviewed; 269 AA.
AC Q8U919;
DT 07-JUN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 85.
DE RecName: Full=Putative hydro-lyase Atu3911 {ECO:0000255|HAMAP-Rule:MF_01830};
DE EC=4.2.1.- {ECO:0000255|HAMAP-Rule:MF_01830};
GN OrderedLocusNames=Atu3911; ORFNames=AGR_L_1868;
OS Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens
OS (strain C58)).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
OC Agrobacterium tumefaciens complex.
OX NCBI_TaxID=176299;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970;
RX PubMed=11743193; DOI=10.1126/science.1066804;
RA Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K.,
RA Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y.,
RA Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P.,
RA Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R.,
RA Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G.,
RA Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y.,
RA Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S.,
RA Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F.,
RA Gordon M.P., Olson M.V., Nester E.W.;
RT "The genome of the natural genetic engineer Agrobacterium tumefaciens
RT C58.";
RL Science 294:2317-2323(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970;
RX PubMed=11743194; DOI=10.1126/science.1066803;
RA Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B.,
RA Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K.,
RA Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M.,
RA Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C.,
RA Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.;
RT "Genome sequence of the plant pathogen and biotechnology agent
RT Agrobacterium tumefaciens C58.";
RL Science 294:2323-2328(2001).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS).
RG Northeast structural genomics consortium (NESG);
RT "Crystal structure of Putative hydro-lyase Atu3911 from Agrobacterium
RT tumefaciens. Northeast structural genomics target atr186 (casp target).";
RL Submitted (FEB-2009) to the PDB data bank.
CC -!- SIMILARITY: Belongs to the D-glutamate cyclase family.
CC {ECO:0000255|HAMAP-Rule:MF_01830}.
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DR EMBL; AE007870; AAK89508.1; -; Genomic_DNA.
DR PIR; AI3037; AI3037.
DR PIR; B98248; B98248.
DR RefSeq; NP_356723.1; NC_003063.2.
DR RefSeq; WP_010973421.1; NC_003063.2.
DR PDB; 3DB9; X-ray; 2.80 A; A=1-269.
DR PDBsum; 3DB9; -.
DR AlphaFoldDB; Q8U919; -.
DR SMR; Q8U919; -.
DR STRING; 176299.Atu3911; -.
DR EnsemblBacteria; AAK89508; AAK89508; Atu3911.
DR GeneID; 66224169; -.
DR KEGG; atu:Atu3911; -.
DR PATRIC; fig|176299.10.peg.3735; -.
DR eggNOG; COG4336; Bacteria.
DR HOGENOM; CLU_059759_0_0_5; -.
DR OMA; NVPMYKT; -.
DR PhylomeDB; Q8U919; -.
DR BioCyc; AGRO:ATU3911-MON; -.
DR EvolutionaryTrace; Q8U919; -.
DR Proteomes; UP000000813; Chromosome linear.
DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
DR HAMAP; MF_01830; Hydro_lyase; 1.
DR InterPro; IPR009906; D-Glu_cyclase.
DR InterPro; IPR038021; Putative_hydro-lyase.
DR InterPro; IPR016938; UPF0317.
DR Pfam; PF07286; DUF1445; 1.
DR PIRSF; PIRSF029755; UCP029755; 1.
DR SUPFAM; SSF160920; SSF160920; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Lyase; Reference proteome.
FT CHAIN 1..269
FT /note="Putative hydro-lyase Atu3911"
FT /id="PRO_0000217159"
FT HELIX 19..25
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 38..41
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 43..46
FT /evidence="ECO:0007829|PDB:3DB9"
FT HELIX 48..60
FT /evidence="ECO:0007829|PDB:3DB9"
FT TURN 62..64
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 68..70
FT /evidence="ECO:0007829|PDB:3DB9"
FT TURN 86..88
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 89..91
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 93..97
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 100..103
FT /evidence="ECO:0007829|PDB:3DB9"
FT HELIX 109..112
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 119..122
FT /evidence="ECO:0007829|PDB:3DB9"
FT TURN 132..137
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 151..157
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 167..176
FT /evidence="ECO:0007829|PDB:3DB9"
FT HELIX 181..188
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 199..201
FT /evidence="ECO:0007829|PDB:3DB9"
FT HELIX 203..206
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 226..232
FT /evidence="ECO:0007829|PDB:3DB9"
FT HELIX 235..243
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 247..252
FT /evidence="ECO:0007829|PDB:3DB9"
FT STRAND 258..263
FT /evidence="ECO:0007829|PDB:3DB9"
SQ SEQUENCE 269 AA; 28937 MW; 1168B759338E13E2 CRC64;
MTIPTSYLNH TDAEAARKAR ATYRDGLVAP TSGIAPGFTQ ANMIVLPRDW AFDFLLYAQR
NPKPCPVLDV SDPGSPTTLL APGADLRTDL PLYRIWRDGK LAEETADATS AWAERDDLVA
FLIGCSFTFE TPMVEAGIEI RHMTDKSNVP MYLTNRPCRP AGRLKGNMVV SMRPIPASRV
ADAATISGRF PAVHGAPVHV GAPEQIGISD LSKPDFGDAV RIEPGEVPVF WACGVTPQAA
VMASGVPFAI THAPGHMFIT DIPDTAYHA
