Y4295_ARATH
ID Y4295_ARATH Reviewed; 358 AA.
AC Q8LFV1; Q9SU90;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 77.
DE RecName: Full=UPF0725 protein At4g29550;
GN OrderedLocusNames=At4g29550; ORFNames=T16L4.60;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the UPF0725 (EMB2204) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB45315.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB79713.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL079344; CAB45315.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161575; CAB79713.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE85644.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66255.1; -; Genomic_DNA.
DR EMBL; DQ446881; ABE66100.1; -; mRNA.
DR EMBL; AY084630; AAM61193.1; -; mRNA.
DR PIR; T09918; T09918.
DR RefSeq; NP_001328164.1; NM_001341972.1.
DR RefSeq; NP_567829.1; NM_119100.1.
DR AlphaFoldDB; Q8LFV1; -.
DR SMR; Q8LFV1; -.
DR PaxDb; Q8LFV1; -.
DR PRIDE; Q8LFV1; -.
DR ProteomicsDB; 242901; -.
DR EnsemblPlants; AT4G29550.1; AT4G29550.1; AT4G29550.
DR EnsemblPlants; AT4G29550.2; AT4G29550.2; AT4G29550.
DR GeneID; 829076; -.
DR Gramene; AT4G29550.1; AT4G29550.1; AT4G29550.
DR Gramene; AT4G29550.2; AT4G29550.2; AT4G29550.
DR KEGG; ath:AT4G29550; -.
DR Araport; AT4G29550; -.
DR TAIR; locus:2134383; AT4G29550.
DR HOGENOM; CLU_053767_2_1_1; -.
DR InParanoid; Q8LFV1; -.
DR OrthoDB; 815095at2759; -.
DR PhylomeDB; Q8LFV1; -.
DR PRO; PR:Q8LFV1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8LFV1; baseline and differential.
DR Genevisible; Q8LFV1; AT.
DR InterPro; IPR006462; MS5.
DR PANTHER; PTHR31260; PTHR31260; 1.
DR Pfam; PF04776; protein_MS5; 1.
DR TIGRFAMs; TIGR01572; A_thl_para_3677; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..358
FT /note="UPF0725 protein At4g29550"
FT /id="PRO_0000363122"
FT REGION 31..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 358 AA; 41186 MW; 9BA3F0607EE4A147 CRC64;
MEAVDRPLRI EETTVSHDVS SCGFISKEEW LNKHPPSGSG WTDEDDDNDD VFSSSFISKE
ELSDAVHNDP PSGWTDEDDD DQVDPALEKE FYRQIRESDG FDVDIRIPTS SLYVYKCANN
DDLRGDIVGI CARVGLHWYN FQKGSNLELM HVDKYNSRFC ALMTYNITAE AVDPANDSRF
TFQTCVTRAT CQKDEDLRIL TEVCRIKPKI QGTGDEIKRW NDEAIDDIYK GNLPEWISDD
TLMSCSEQDH FYRVQESDIR EHNWLQLYTE IASYSLWEGD MRLKSCVPLQ IKNVLVRTRE
DFKSKEKLKA GNAIFYISFR GVNTPHGPPQ DHRAIVRRTV DGIPGHVCLE FKCLLMDL
