Y4563_ARATH
ID Y4563_ARATH Reviewed; 124 AA.
AC Q9M0U1; Q8RYD0;
DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=B3 domain-containing protein At4g05630;
DE AltName: Full=Protein AUXIN RESPONSE FACTOR 46;
GN Name=ARF46; OrderedLocusNames=At4g05630; ORFNames=F21I2.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Ciarbelli A.R., Carabelli M., Ruzza V., Sessa G., Steindler C., Ruberti I.;
RT "Nucleotide sequence of the putative Arabidopsis ARF46.";
RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- INTERACTION:
CC Q9M0U1; P29382: SEP1; NbExp=3; IntAct=EBI-15194131, EBI-632935;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; AJ441293; CAD29661.1; -; mRNA.
DR EMBL; AF147261; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL161504; CAB77927.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82540.1; -; Genomic_DNA.
DR EMBL; AB493677; BAH30515.1; -; Genomic_DNA.
DR PIR; G85070; G85070.
DR RefSeq; NP_192472.1; NM_116801.1.
DR AlphaFoldDB; Q9M0U1; -.
DR SMR; Q9M0U1; -.
DR BioGRID; 11246; 9.
DR IntAct; Q9M0U1; 9.
DR STRING; 3702.AT4G05630.1; -.
DR PaxDb; Q9M0U1; -.
DR PRIDE; Q9M0U1; -.
DR EnsemblPlants; AT4G05630.1; AT4G05630.1; AT4G05630.
DR GeneID; 825935; -.
DR Gramene; AT4G05630.1; AT4G05630.1; AT4G05630.
DR KEGG; ath:AT4G05630; -.
DR Araport; AT4G05630; -.
DR TAIR; locus:2121576; AT4G05630.
DR HOGENOM; CLU_1951761_0_0_1; -.
DR InParanoid; Q9M0U1; -.
DR OMA; DRSTTIM; -.
DR OrthoDB; 1394694at2759; -.
DR PRO; PR:Q9M0U1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9M0U1; baseline and differential.
DR Genevisible; Q9M0U1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR SUPFAM; SSF101936; SSF101936; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..124
FT /note="B3 domain-containing protein At4g05630"
FT /id="PRO_0000412852"
FT DNA_BIND 32..124
FT /note="TF-B3"
FT CONFLICT 65
FT /note="I -> V (in Ref. 1; CAD29661)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 124 AA; 14657 MW; 43006E6FCB7098FA CRC64;
MANFPDKQYD SNNPYNIMIT LSPFDVDRST TIMMPKALLE TNLFPFMEIS TLVQLLQVQD
KPKMIGVYDI DTQITTYVII RQDGNNFKFH GWNDILKRKH YKAGDTIAFW WDLRHTRLNF
KHVA
