Y4844_ARATH
ID Y4844_ARATH Reviewed; 153 AA.
AC O49453;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-1998, sequence version 1.
DT 25-MAY-2022, entry version 128.
DE RecName: Full=Uncharacterized protein At4g28440;
GN OrderedLocusNames=At4g28440; ORFNames=F20O9.120;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, CLEAVAGE OF INITIATOR
RP METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY
RP [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
RN [6]
RP STRUCTURE BY NMR OF 14-145.
RG RIKEN structural genomics initiative (RSGI);
RT "Solution structure of hypothetical protein F20O9.120 from Arabidopsis
RT thaliana.";
RL Submitted (NOV-2004) to the PDB data bank.
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DR EMBL; AL021749; CAA16883.1; -; Genomic_DNA.
DR EMBL; AL161572; CAB79646.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85487.1; -; Genomic_DNA.
DR EMBL; AY050905; AAK93582.1; -; mRNA.
DR EMBL; AY056432; AAL08288.1; -; mRNA.
DR EMBL; AY091407; AAM14346.1; -; mRNA.
DR EMBL; AY088082; AAM65628.1; -; mRNA.
DR PIR; T04614; T04614.
DR RefSeq; NP_194573.1; NM_118986.3.
DR PDB; 1WJJ; NMR; -; A=14-145.
DR PDBsum; 1WJJ; -.
DR AlphaFoldDB; O49453; -.
DR BMRB; O49453; -.
DR SMR; O49453; -.
DR BioGRID; 14248; 12.
DR IntAct; O49453; 2.
DR STRING; 3702.AT4G28440.1; -.
DR iPTMnet; O49453; -.
DR MetOSite; O49453; -.
DR PaxDb; O49453; -.
DR PRIDE; O49453; -.
DR ProteomicsDB; 242887; -.
DR EnsemblPlants; AT4G28440.1; AT4G28440.1; AT4G28440.
DR GeneID; 828961; -.
DR Gramene; AT4G28440.1; AT4G28440.1; AT4G28440.
DR KEGG; ath:AT4G28440; -.
DR Araport; AT4G28440; -.
DR TAIR; locus:2121313; AT4G28440.
DR eggNOG; ENOG502S0IA; Eukaryota.
DR HOGENOM; CLU_110881_0_0_1; -.
DR InParanoid; O49453; -.
DR OMA; IVECLIG; -.
DR OrthoDB; 1386188at2759; -.
DR PhylomeDB; O49453; -.
DR EvolutionaryTrace; O49453; -.
DR PRO; PR:O49453; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O49453; baseline and differential.
DR Genevisible; O49453; AT.
DR GO; GO:0005886; C:plasma membrane; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 2.40.50.140; -; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR SUPFAM; SSF50249; SSF50249; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Acetylation; Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CHAIN 2..153
FT /note="Uncharacterized protein At4g28440"
FT /id="PRO_0000220612"
FT MOD_RES 2
FT /note="N-acetylalanine"
FT /evidence="ECO:0007744|PubMed:22223895"
FT STRAND 35..46
FT /evidence="ECO:0007829|PDB:1WJJ"
FT STRAND 49..52
FT /evidence="ECO:0007829|PDB:1WJJ"
FT STRAND 70..75
FT /evidence="ECO:0007829|PDB:1WJJ"
FT STRAND 80..85
FT /evidence="ECO:0007829|PDB:1WJJ"
FT HELIX 89..92
FT /evidence="ECO:0007829|PDB:1WJJ"
FT STRAND 98..109
FT /evidence="ECO:0007829|PDB:1WJJ"
FT STRAND 112..117
FT /evidence="ECO:0007829|PDB:1WJJ"
FT TURN 139..141
FT /evidence="ECO:0007829|PDB:1WJJ"
SQ SEQUENCE 153 AA; 16459 MW; DC0AE6BAD91B4687 CRC64;
MATTGTAAVA TGTSTVKRKP VFVKVEQLKP GTTGHTLTVK VIEANIVVPV TRKTRPASSL
SRPSQPSRIV ECLIGDETGC ILFTARNDQV DLMKPGATVI LRNSRIDMFK GTMRLGVDKW
GRIEATGAAS FTVKEDNNLS LVEYELINVG GDQ
