ID   Y4BL_SINFN              Reviewed;         516 AA.
AC   P55379;
DT   01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1997, sequence version 1.
DT   25-MAY-2022, entry version 122.
DE   RecName: Full=Putative transposase y4bL/y4kJ/y4tB;
GN   OrderedLocusNames=NGR_a00180; ORFNames=y4bL;
GN   and
GN   OrderedLocusNames=NGR_a02860; ORFNames=y4kJ;
GN   and
GN   OrderedLocusNames=NGR_a01560; ORFNames=y4tB;
OS   Sinorhizobium fredii (strain NBRC 101917 / NGR234).
OG   Plasmid sym pNGR234a.
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC   Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX   NCBI_TaxID=394;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101917 / NGR234;
RX   PubMed=9163424; DOI=10.1038/387394a0;
RA   Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A.,
RA   Perret X.;
RT   "Molecular basis of symbiosis between Rhizobium and legumes.";
RL   Nature 387:394-401(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101917 / NGR234;
RX   PubMed=19376903; DOI=10.1128/aem.00515-09;
RA   Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A.,
RA   Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A.,
RA   Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A.,
RA   Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.;
RT   "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion
RT   systems.";
RL   Appl. Environ. Microbiol. 75:4035-4045(2009).
CC   -!- SIMILARITY: Belongs to the transposase IS21/IS408/IS1162 family.
CC       {ECO:0000305}.
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DR   EMBL; U00090; AAB91627.1; -; Genomic_DNA.
DR   EMBL; U00090; AAB91741.1; -; Genomic_DNA.
DR   EMBL; U00090; AAB91856.1; -; Genomic_DNA.
DR   RefSeq; NP_443789.1; NC_000914.2.
DR   RefSeq; NP_443939.1; NC_000914.2.
DR   RefSeq; NP_444069.1; NC_000914.2.
DR   RefSeq; WP_010875060.1; NC_012587.1.
DR   RefSeq; YP_002822318.1; NC_012586.1.
DR   RefSeq; YP_002823144.1; NC_012586.1.
DR   RefSeq; YP_002823695.1; NC_012586.1.
DR   RefSeq; YP_002826747.1; NC_012587.1.
DR   AlphaFoldDB; P55379; -.
DR   STRING; 394.NGR_c22340; -.
DR   EnsemblBacteria; AAB91627; AAB91627; NGR_a00180.
DR   EnsemblBacteria; AAB91741; AAB91741; NGR_a01560.
DR   EnsemblBacteria; AAB91856; AAB91856; NGR_a02860.
DR   KEGG; rhi:NGR_a00180; -.
DR   KEGG; rhi:NGR_a01560; -.
DR   KEGG; rhi:NGR_a02860; -.
DR   eggNOG; COG2390; Bacteria.
DR   eggNOG; COG4584; Bacteria.
DR   HOGENOM; CLU_020626_11_0_5; -.
DR   OMA; ALWFEPT; -.
DR   OrthoDB; 362657at2; -.
DR   Proteomes; UP000001054; Plasmid sym pNGR234a.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR   CDD; cd00090; HTH_ARSR; 1.
DR   Gene3D; 3.30.420.10; -; 1.
DR   InterPro; IPR011991; ArsR-like_HTH.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017895; HTH_IS408/IS1162_type.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   PROSITE; PS50532; HTH_IS408; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   3: Inferred from homology;
KW   DNA recombination; DNA-binding; Plasmid; Reference proteome;
KW   Transposable element; Transposition.
FT   CHAIN           1..516
FT                   /note="Putative transposase y4bL/y4kJ/y4tB"
FT                   /id="PRO_0000075472"
FT   DOMAIN          15..96
FT                   /note="HTH IS408-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00616"
FT   DOMAIN          138..319
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00457"
FT   REGION          493..516
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   516 AA;  58267 MW;  0ADF071C6DEA4A27 CRC64;
     MPRRKQARRT TVRDIRTILR LTHEEGLSVR EIAERLKIGK SSVSTYLLRS REAGLSWPLP
     IGADEDAKLE RRLFGRAGRP PRDLSEPDWA LVVRELKRKG VTLTLLWQEY RASHPDGYGF
     TWFCEQVAAF RQRTSVAFRN RHAAGAVMQT DYAGPTVPVI DPATGVIHPA QIFVAVLGAS
     NLTFAHASFS QQLPDWIDGQ VRALTFYGGV TKAIVCDNLK SGVAKALWFE PTLTATFAAM
     AEHYDTTILP TRSRKPRDKG RVEGAVLIVE RWILARLRNR TFFSLAALNT AIAELLEDLN
     NRTMRHVGKS RRELFEEIER PALKPLPAIP FEYAEWKSAK VHPDYHVEVD KTFYSVPHRL
     IGCTLQVRLT HRVVEIFHDH QRVASHVRRS QRSGHVTVND HMPKAHQRYA NTTPANLIGR
     ATQIGPNAAI LVERMMRDRP HPEQGYRSAM GILSLAPRYG SQRLEAACER ALTINAITYS
     SVASILKSGL DRERPQAEHA APTPAHTNIR GRSYYQ