ID   Y4RC_SINFN              Reviewed;         332 AA.
AC   P55636;
DT   01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1997, sequence version 1.
DT   25-MAY-2022, entry version 120.
DE   RecName: Full=Putative integrase/recombinase y4rC;
GN   OrderedLocusNames=NGR_a01840; ORFNames=y4rC;
OS   Sinorhizobium fredii (strain NBRC 101917 / NGR234).
OG   Plasmid sym pNGR234a.
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC   Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX   NCBI_TaxID=394;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101917 / NGR234;
RX   PubMed=9163424; DOI=10.1038/387394a0;
RA   Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A.,
RA   Perret X.;
RT   "Molecular basis of symbiosis between Rhizobium and legumes.";
RL   Nature 387:394-401(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101917 / NGR234;
RX   PubMed=19376903; DOI=10.1128/aem.00515-09;
RA   Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A.,
RA   Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A.,
RA   Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A.,
RA   Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.;
RT   "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion
RT   systems.";
RL   Appl. Environ. Microbiol. 75:4035-4045(2009).
CC   -!- SIMILARITY: Belongs to the 'phage' integrase family. {ECO:0000305}.
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DR   EMBL; U00090; AAB92469.1; -; Genomic_DNA.
DR   RefSeq; NP_444041.1; NC_000914.2.
DR   RefSeq; WP_010875218.1; NC_000914.2.
DR   AlphaFoldDB; P55636; -.
DR   SMR; P55636; -.
DR   STRING; 394.NGR_a01840; -.
DR   EnsemblBacteria; AAB92469; AAB92469; NGR_a01840.
DR   KEGG; rhi:NGR_a01840; -.
DR   PATRIC; fig|394.7.peg.182; -.
DR   eggNOG; COG4974; Bacteria.
DR   HOGENOM; CLU_027562_9_1_5; -.
DR   OMA; HADMTIK; -.
DR   OrthoDB; 745068at2; -.
DR   Proteomes; UP000001054; Plasmid sym pNGR234a.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0075713; P:establishment of integrated proviral latency; IEA:UniProtKB-KW.
DR   GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
DR   GO; GO:0044826; P:viral genome integration into host DNA; IEA:UniProtKB-KW.
DR   Gene3D; 1.10.150.130; -; 1.
DR   Gene3D; 1.10.443.10; -; 1.
DR   InterPro; IPR044068; CB.
DR   InterPro; IPR011010; DNA_brk_join_enz.
DR   InterPro; IPR013762; Integrase-like_cat_sf.
DR   InterPro; IPR002104; Integrase_catalytic.
DR   InterPro; IPR010998; Integrase_recombinase_N.
DR   InterPro; IPR004107; Integrase_SAM-like_N.
DR   Pfam; PF02899; Phage_int_SAM_1; 1.
DR   Pfam; PF00589; Phage_integrase; 1.
DR   SUPFAM; SSF56349; SSF56349; 1.
DR   PROSITE; PS51900; CB; 1.
DR   PROSITE; PS51898; TYR_RECOMBINASE; 1.
PE   3: Inferred from homology;
KW   DNA integration; DNA recombination; DNA-binding; Plasmid;
KW   Reference proteome; Transposable element; Viral genome integration;
KW   Virus entry into host cell.
FT   CHAIN           1..332
FT                   /note="Putative integrase/recombinase y4rC"
FT                   /id="PRO_0000197579"
FT   DOMAIN          5..98
FT                   /note="Core-binding (CB)"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01248"
FT   DOMAIN          122..307
FT                   /note="Tyr recombinase"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
FT   ACT_SITE        162
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
FT   ACT_SITE        187
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
FT   ACT_SITE        259
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
FT   ACT_SITE        262
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
FT   ACT_SITE        285
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
FT   ACT_SITE        294
FT                   /note="O-(3'-phospho-DNA)-tyrosine intermediate"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01246"
SQ   SEQUENCE   332 AA;  37710 MW;  DC018EBA4A5C2EE5 CRC64;
     MTKHASLAPL LESFFLQRLM QQRQASPHTI SSYRDTFRQL LKFAERRLRK PPSRLNFEEI
     DAPLIVAFLD DLENRQGISV RSRNLRLTAI HSFFRYAAFE IPEHSAQIQR VLAIPSKRFT
     RTLVNFLTRP EVDALLAAPD RSTWSGRRDH AFLLVAVQTG LRLSEITGLK RDDLFFGTGA
     HLRVIGKGRK ERCTPFAKST TAVLRNWLKE PQRGDQGILF PSARGERLSV HGVQYMLNKH
     RQIASAMSPS LEGKRVTVHR LRHTMAMDLL QAGVDRAVIA LWLGHESVET TQIYLEATLA
     MKEAALAKTS PYSGKSSRFR PDDNLLAFLN SL