Y5142_ARATH
ID Y5142_ARATH Reviewed; 346 AA.
AC Q9LST3; F4JXH4;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 16-NOV-2011, sequence version 3.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=B3 domain-containing protein At5g60142;
GN OrderedLocusNames=At5g60142; ORFNames=F15L12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- INTERACTION:
CC Q9LST3; Q9C517: At1g66420; NbExp=3; IntAct=EBI-15192745, EBI-15194681;
CC Q9LST3; Q9C6K4: At1g76870; NbExp=3; IntAct=EBI-15192745, EBI-15193203;
CC Q9LST3; Q9ASZ1: GEBP; NbExp=3; IntAct=EBI-15192745, EBI-15191723;
CC Q9LST3; Q38828: IAA10; NbExp=3; IntAct=EBI-15192745, EBI-3946434;
CC Q9LST3; Q38822: IAA3; NbExp=3; IntAct=EBI-15192745, EBI-307174;
CC Q9LST3; Q8H174: IAA31; NbExp=3; IntAct=EBI-15192745, EBI-3946408;
CC Q9LST3; Q9C5X0: IAA34; NbExp=3; IntAct=EBI-15192745, EBI-3946459;
CC Q9LST3; Q38827: IAA9; NbExp=3; IntAct=EBI-15192745, EBI-632216;
CC Q9LST3; Q8LG05: STKL1; NbExp=3; IntAct=EBI-15192745, EBI-4424255;
CC Q9LST3; O23077: STKL2; NbExp=3; IntAct=EBI-15192745, EBI-15193247;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA97494.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB026632; BAA97494.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED97285.1; -; Genomic_DNA.
DR RefSeq; NP_001119463.2; NM_001125991.3.
DR RefSeq; NP_001331554.1; NM_001345399.1.
DR AlphaFoldDB; Q9LST3; -.
DR SMR; Q9LST3; -.
DR BioGRID; 927206; 32.
DR IntAct; Q9LST3; 32.
DR STRING; 3702.AT5G60142.1; -.
DR PaxDb; Q9LST3; -.
DR PRIDE; Q9LST3; -.
DR EnsemblPlants; AT5G60142.1; AT5G60142.1; AT5G60142.
DR GeneID; 6241172; -.
DR Gramene; AT5G60142.1; AT5G60142.1; AT5G60142.
DR KEGG; ath:AT5G60142; -.
DR Araport; AT5G60142; -.
DR TAIR; locus:4515103743; AT5G60142.
DR HOGENOM; CLU_048511_0_0_1; -.
DR InParanoid; Q9LST3; -.
DR OrthoDB; 1126273at2759; -.
DR PRO; PR:Q9LST3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LST3; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 2.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..346
FT /note="B3 domain-containing protein At5g60142"
FT /id="PRO_0000375151"
FT DNA_BIND 13..109
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 158..179
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 192..243
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 192..215
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 216..243
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 346 AA; 40190 MW; 870441C6C2556907 CRC64;
MMNRGISVDD CLPKFFKVYL PDDSGDDLEL PISFNSFLPK SLPKNVIVRS IYGNIWKVAF
RKFCGDSERF VMVNGWKKIV KDEDLKGGEF LEFEFDGSWC FNFCIYGRAT CKRLRSSVQI
TVLDDNDDGF NDDQDYGEEV KSSENFIVLD DDDISDVQDY NEEDTSSEDI TALDDADNDD
INDVQDYVEE DTSSEDIIVI DDDDDDDDQD YGDDDHADVE KERWRGVKTE KKKKGSSGEH
DRQYLDNHMN PFFTVNQHRQ IKYNMLRIPT KVITKYGLHF PEFINLIDPL EKNFGKLKRK
VKGQTIKGFR SIIRRNNVKL NDKVICELEK EMDGLVREIK VHVIRG
