Y5390_ARATH
ID Y5390_ARATH Reviewed; 523 AA.
AC Q8GW20; Q8L632; Q8LG15; Q9FFM9; Q9LZB9;
DT 21-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT 21-FEB-2006, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Uncharacterized protein At5g03900, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At5g03900; ORFNames=F8F6_110, MED24.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane {ECO:0000255};
CC Multi-pass membrane protein {ECO:0000255}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q8GW20-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8GW20-2; Sequence=VSP_017285, VSP_017286;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to intron retention.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB08616.1; Type=Erroneous gene model prediction; Note=The predicted gene At5g03900 has been split into 2 genes: At5g03900 and At5g03905.; Evidence={ECO:0000305};
CC Sequence=CAB85510.1; Type=Erroneous gene model prediction; Note=The predicted gene At5g03900 has been split into 2 genes: At5g03900 and At5g03905.; Evidence={ECO:0000305};
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DR EMBL; AB005235; BAB08616.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL162873; CAB85510.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED90668.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90669.1; -; Genomic_DNA.
DR EMBL; AK119134; BAC43704.1; -; mRNA.
DR EMBL; AY099567; AAM20419.1; -; mRNA.
DR EMBL; BT006578; AAP31922.1; -; mRNA.
DR EMBL; AY084515; AAM61083.1; -; mRNA.
DR PIR; T48417; T48417.
DR RefSeq; NP_568129.1; NM_120471.4. [Q8GW20-1]
DR RefSeq; NP_850761.1; NM_180430.2. [Q8GW20-2]
DR AlphaFoldDB; Q8GW20; -.
DR SMR; Q8GW20; -.
DR STRING; 3702.AT5G03900.2; -.
DR PaxDb; Q8GW20; -.
DR PRIDE; Q8GW20; -.
DR ProteomicsDB; 243160; -. [Q8GW20-1]
DR EnsemblPlants; AT5G03900.1; AT5G03900.1; AT5G03900. [Q8GW20-2]
DR EnsemblPlants; AT5G03900.2; AT5G03900.2; AT5G03900. [Q8GW20-1]
DR GeneID; 831927; -.
DR Gramene; AT5G03900.1; AT5G03900.1; AT5G03900. [Q8GW20-2]
DR Gramene; AT5G03900.2; AT5G03900.2; AT5G03900. [Q8GW20-1]
DR KEGG; ath:AT5G03900; -.
DR Araport; AT5G03900; -.
DR TAIR; locus:2150560; AT5G03900.
DR eggNOG; KOG1119; Eukaryota.
DR InParanoid; Q8GW20; -.
DR OMA; EDYMLPV; -.
DR OrthoDB; 1442681at2759; -.
DR PhylomeDB; Q8GW20; -.
DR PRO; PR:Q8GW20; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8GW20; baseline and differential.
DR Genevisible; Q8GW20; AT.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR InterPro; IPR044200; At5g03900-like.
DR PANTHER; PTHR47380; PTHR47380; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Chloroplast; Membrane; Plastid; Reference proteome;
KW Transit peptide; Transmembrane; Transmembrane helix.
FT TRANSIT 1..63
FT /note="Chloroplast"
FT /evidence="ECO:0000305"
FT CHAIN 64..523
FT /note="Uncharacterized protein At5g03900, chloroplastic"
FT /id="PRO_0000223683"
FT TRANSMEM 180..200
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 386..406
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 423..443
FT /note="Helical"
FT /evidence="ECO:0000255"
FT VAR_SEQ 429
FT /note="I -> V (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_017285"
FT VAR_SEQ 430..523
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_017286"
FT CONFLICT 229
FT /note="V -> A (in Ref. 4; BAC43704)"
FT /evidence="ECO:0000305"
FT CONFLICT 338
FT /note="C -> R (in Ref. 6; AAM61083)"
FT /evidence="ECO:0000305"
FT CONFLICT 368
FT /note="K -> R (in Ref. 4; BAC43704)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 523 AA; 59501 MW; 68160010F66D9AF3 CRC64;
MACVSTCLIL SPRLTQVGLS SKKPFLIRLR SPVDRYSFPR MLTERCLSTR RKFNRHGIAV
VKAASLDKVS GAIKPGGLVE SDKLPTDVRK RAMDAVDECG RRVTVGDVAS RGGLKVTEAQ
TALQAIAADT DGFLEVSDEG DVLYVFPRDY RTKLAAKSLR IQIEPFLEKA KGAVDYLARV
SFGTALIASI VIVYTSIIAL LSSKSEDDNR QRRRGRSYDS GFNFYINPVD LLWYWDPNYY
NRRRAREDEG KGMNFIESVF SFVFGDGDPN QGIEEERWQM IGQYITSRGG VVAADELAPY
LDVPSSKSAM NDESYILPVL LRFDGQPELD EEGNILYCFP SLQRTASGSS RRKEYVGKWF
DWVADMEKFF KEKKWQFSKT STSERALVIG LGAVNLFGVI VLNTLLNEMS VRPGGFLTFV
KNIYPLLQIY AGSFFTIPLI RWFSIKRKNN QIENRNKARL QFARALESPD IALRRKLLSA
RDMAQKTVIG KDRIVYSTDR DMMEQNYETD EWDRRFKELE KSD
