Y5406_ARATH
ID Y5406_ARATH Reviewed; 126 AA.
AC Q3E7N5;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=B3 domain-containing protein At5g54067;
GN OrderedLocusNames=At5g54067; ORFNames=MJP23;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF Clones.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; AB018115; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED96445.1; -; Genomic_DNA.
DR EMBL; BT029310; ABK32124.1; -; mRNA.
DR RefSeq; NP_680433.1; NM_148128.2.
DR AlphaFoldDB; Q3E7N5; -.
DR SMR; Q3E7N5; -.
DR BioGRID; 20736; 10.
DR IntAct; Q3E7N5; 10.
DR PaxDb; Q3E7N5; -.
DR PRIDE; Q3E7N5; -.
DR EnsemblPlants; AT5G54067.1; AT5G54067.1; AT5G54067.
DR GeneID; 835492; -.
DR Gramene; AT5G54067.1; AT5G54067.1; AT5G54067.
DR KEGG; ath:AT5G54067; -.
DR Araport; AT5G54067; -.
DR TAIR; locus:504954911; AT5G54067.
DR HOGENOM; CLU_162241_0_0_1; -.
DR InParanoid; Q3E7N5; -.
DR OMA; DPLEPAM; -.
DR OrthoDB; 1512723at2759; -.
DR PhylomeDB; Q3E7N5; -.
DR PRO; PR:Q3E7N5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q3E7N5; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..126
FT /note="B3 domain-containing protein At5g54067"
FT /id="PRO_0000375154"
FT DNA_BIND 20..118
FT /note="TF-B3"
SQ SEQUENCE 126 AA; 14270 MW; C8F1A3911E94DF5F CRC64;
MNYNDPLEPA MIITKVLSKS DIVGNVVLPK AEVMSVLTRM NVNDQDLLNG VEVQVDDIME
DDLYTVTLKV SGIDKPKYYF GTGWSTMKHS LDLSEGDVLK LYWSHLDNKF VVLNFQYSVL
PLMIPV