Y5475_ARATH
ID Y5475_ARATH Reviewed; 282 AA.
AC Q680D9; Q8GZ90; Q8LBK4;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=B3 domain-containing protein At5g25475;
GN OrderedLocusNames=At5g25475; ORFNames=T14C9.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q680D9-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAO63296.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAC41820.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAD44214.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93449.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93450.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93451.1; -; Genomic_DNA.
DR EMBL; AK117142; BAC41820.1; ALT_FRAME; mRNA.
DR EMBL; BT005232; AAO63296.1; ALT_FRAME; mRNA.
DR EMBL; AK175928; BAD43691.1; -; mRNA.
DR EMBL; AK176451; BAD44214.1; ALT_FRAME; mRNA.
DR EMBL; AY087156; AAM64714.1; -; mRNA.
DR RefSeq; NP_001078620.1; NM_001085151.2. [Q680D9-1]
DR RefSeq; NP_568473.1; NM_122458.6. [Q680D9-1]
DR RefSeq; NP_851075.1; NM_180744.4. [Q680D9-1]
DR AlphaFoldDB; Q680D9; -.
DR SMR; Q680D9; -.
DR BioGRID; 17897; 9.
DR IntAct; Q680D9; 8.
DR PRIDE; Q680D9; -.
DR ProteomicsDB; 243115; -. [Q680D9-1]
DR EnsemblPlants; AT5G25475.1; AT5G25475.1; AT5G25475. [Q680D9-1]
DR EnsemblPlants; AT5G25475.2; AT5G25475.2; AT5G25475. [Q680D9-1]
DR EnsemblPlants; AT5G25475.3; AT5G25475.3; AT5G25475. [Q680D9-1]
DR GeneID; 832622; -.
DR Gramene; AT5G25475.1; AT5G25475.1; AT5G25475. [Q680D9-1]
DR Gramene; AT5G25475.2; AT5G25475.2; AT5G25475. [Q680D9-1]
DR Gramene; AT5G25475.3; AT5G25475.3; AT5G25475. [Q680D9-1]
DR KEGG; ath:AT5G25475; -.
DR Araport; AT5G25475; -.
DR InParanoid; Q680D9; -.
DR OMA; GNKMEGF; -.
DR PhylomeDB; Q680D9; -.
DR PRO; PR:Q680D9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q680D9; baseline and differential.
DR Genevisible; Q680D9; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 2.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..282
FT /note="B3 domain-containing protein At5g25475"
FT /id="PRO_0000375155"
FT DNA_BIND 20..114
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 127..178
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 141..168
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 154
FT /note="G -> R (in Ref. 6; AAM64714)"
FT /evidence="ECO:0000305"
FT CONFLICT 165
FT /note="G -> A (in Ref. 6; AAM64714)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 282 AA; 32292 MW; 1AE9F9AE8E0E77E3 CRC64;
MLPKNAIEKI QANVSKPCFW KSLSPGQTWK SKSMRIIPED FVRRTRGAFE HRVVFSVRWE
NSWQLWLERE KNELFMIEED WNEFVDDNHL GPNDNLFIKH DETMNLEVQI FKNNGVEIID
VPLGVEPETE PFHPTPKKPH KETTPASSFA SGSGCSANGG TNGRGKQRSS DVKNPERYLL
NPENPYFVQA VTKRNDVLYV SRPVVQSYRL KFGPVKSTIT YLLPGEKKEE GENRIYNGKP
CFSGWSVLCR RHNLNIGDSV VCELERSGGV VTAVRVHFVK KD
