Y5513_ORYSJ
ID Y5513_ORYSJ Reviewed; 253 AA.
AC Q9FRA7; B7FAJ9; Q0DKN7; Q65XQ9;
DT 14-AUG-2001, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 2.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=REF/SRPP-like protein Os05g0151300/LOC_Os05g05940;
GN OrderedLocusNames=Os05g0151300, LOC_Os05g05940;
GN ORFNames=OsJ_016392, OsJ_17148 {ECO:0000312|EMBL:EEE62359.1},
GN OSJNBa0072C16.2, P0001A07.13;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the REF/SRPP family. {ECO:0000305}.
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DR EMBL; AC084218; AAV32206.1; -; Genomic_DNA.
DR EMBL; AC093493; AAU44143.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF16586.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS92316.1; -; Genomic_DNA.
DR EMBL; CM000142; EAZ32909.1; -; Genomic_DNA.
DR EMBL; CM000142; EEE62359.1; -; Genomic_DNA.
DR EMBL; AK243548; BAH01647.1; -; mRNA.
DR RefSeq; XP_015639219.1; XM_015783733.1.
DR AlphaFoldDB; Q9FRA7; -.
DR STRING; 4530.OS05T0151300-01; -.
DR PaxDb; Q9FRA7; -.
DR PRIDE; Q9FRA7; -.
DR EnsemblPlants; Os05t0151300-01; Os05t0151300-01; Os05g0151300.
DR GeneID; 4337833; -.
DR Gramene; Os05t0151300-01; Os05t0151300-01; Os05g0151300.
DR KEGG; osa:4337833; -.
DR eggNOG; ENOG502QUI7; Eukaryota.
DR HOGENOM; CLU_069928_1_0_1; -.
DR InParanoid; Q9FRA7; -.
DR OMA; KSAGVMG; -.
DR OrthoDB; 1309723at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q9FRA7; OS.
DR InterPro; IPR008802; REF.
DR PANTHER; PTHR33732; PTHR33732; 1.
DR Pfam; PF05755; REF; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..253
FT /note="REF/SRPP-like protein Os05g0151300/LOC_Os05g05940"
FT /id="PRO_0000221067"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 253 AA; 26860 MW; E1178D0BB87211E0 CRC64;
MADSGSDAPI SNRPEEEVTV EKTPEMEAAA EEERLRYLEF VQQAAAQVLV LAAAAYAYAK
QGAGPLRPGV DHVEGTVKAV VGPVYDRFHG VPLDLLKFLD RKVGESVQEL DRRVPPVVKE
APGLARSAAA EVRQAGLVGT ATGLAKSAIA RAEPRARDLY TRYEPVAERK AAEAWAALNR
LPLVPSVTRA VLPAAASLSA RYNTAVADGA KRGSAVATYL PLVPTERLSR VFGYPLADAA
TSPAPEMQPI PSQ