Y5547_ARATH
ID Y5547_ARATH Reviewed; 280 AA.
AC Q1PDT6; A0MFH8; Q8LC00;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2006, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=B3 domain-containing protein At5g25470;
GN OrderedLocusNames=At5g25470; ORFNames=T14C9.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM63943.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=ABK28711.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
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DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93447.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93448.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70434.1; -; Genomic_DNA.
DR EMBL; DQ446982; ABE66179.1; -; mRNA.
DR EMBL; DQ653304; ABK28711.1; ALT_SEQ; mRNA.
DR EMBL; AY086898; AAM63943.1; ALT_INIT; mRNA.
DR RefSeq; NP_001318648.1; NM_001343929.1.
DR RefSeq; NP_568472.1; NM_122457.5.
DR RefSeq; NP_851074.1; NM_180743.4.
DR AlphaFoldDB; Q1PDT6; -.
DR SMR; Q1PDT6; -.
DR BioGRID; 17896; 4.
DR IntAct; Q1PDT6; 3.
DR PaxDb; Q1PDT6; -.
DR PRIDE; Q1PDT6; -.
DR ProteomicsDB; 242838; -.
DR EnsemblPlants; AT5G25470.1; AT5G25470.1; AT5G25470.
DR EnsemblPlants; AT5G25470.2; AT5G25470.2; AT5G25470.
DR EnsemblPlants; AT5G25470.3; AT5G25470.3; AT5G25470.
DR GeneID; 832621; -.
DR Gramene; AT5G25470.1; AT5G25470.1; AT5G25470.
DR Gramene; AT5G25470.2; AT5G25470.2; AT5G25470.
DR Gramene; AT5G25470.3; AT5G25470.3; AT5G25470.
DR KEGG; ath:AT5G25470; -.
DR Araport; AT5G25470; -.
DR TAIR; locus:2179464; AT5G25470.
DR HOGENOM; CLU_080825_0_0_1; -.
DR InParanoid; Q1PDT6; -.
DR OMA; NTHMHFL; -.
DR OrthoDB; 1198538at2759; -.
DR PhylomeDB; Q1PDT6; -.
DR PRO; PR:Q1PDT6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q1PDT6; baseline and differential.
DR Genevisible; Q1PDT6; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 2.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..280
FT /note="B3 domain-containing protein At5g25470"
FT /id="PRO_0000375156"
FT DNA_BIND 20..114
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 183..276
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 122..153
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 138..153
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 6
FT /note="A -> F (in Ref. 4; AAM63943)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 280 AA; 32023 MW; C625336D3FE59861 CRC64;
MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE HRVVFSVRWG
NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH DDKMFLEVQI FKNDGNEIID
APPEVEPETE PFHPTTPKNS HKETTTASAS ASASEFSDNW RETHGCADIK NPELYLLNPK
NPYFVKTLTK GNDVLYVPKT VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF
NGWVDLCRKY NLKTGDSMVC ELERSGELVT AVRVHFINKT
