Y5809_ARATH
ID Y5809_ARATH Reviewed; 301 AA.
AC Q9FK61;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=B3 domain-containing protein At5g18090;
GN OrderedLocusNames=At5g18090; ORFNames=MRG7.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
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DR EMBL; AB012246; BAB09467.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92505.1; -; Genomic_DNA.
DR EMBL; BT004099; AAO42124.1; -; mRNA.
DR EMBL; BT005553; AAO63973.1; -; mRNA.
DR EMBL; AY087853; AAM67335.1; -; mRNA.
DR RefSeq; NP_197310.1; NM_121814.3.
DR AlphaFoldDB; Q9FK61; -.
DR SMR; Q9FK61; -.
DR BioGRID; 16912; 2.
DR IntAct; Q9FK61; 2.
DR STRING; 3702.AT5G18090.1; -.
DR iPTMnet; Q9FK61; -.
DR PaxDb; Q9FK61; -.
DR PRIDE; Q9FK61; -.
DR ProteomicsDB; 242910; -.
DR EnsemblPlants; AT5G18090.1; AT5G18090.1; AT5G18090.
DR GeneID; 831636; -.
DR Gramene; AT5G18090.1; AT5G18090.1; AT5G18090.
DR KEGG; ath:AT5G18090; -.
DR Araport; AT5G18090; -.
DR TAIR; locus:2172319; AT5G18090.
DR eggNOG; ENOG502RRIE; Eukaryota.
DR HOGENOM; CLU_083136_0_0_1; -.
DR InParanoid; Q9FK61; -.
DR OMA; QINCLEM; -.
DR OrthoDB; 1210487at2759; -.
DR PhylomeDB; Q9FK61; -.
DR PRO; PR:Q9FK61; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FK61; baseline and differential.
DR Genevisible; Q9FK61; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 2.
DR Gene3D; 2.40.330.10; -; 2.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 2.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..301
FT /note="B3 domain-containing protein At5g18090"
FT /id="PRO_0000375162"
FT DNA_BIND 18..113
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 209..301
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 123..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 153..194
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 157..174
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 176..194
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 301 AA; 34675 MW; C3BC43D551E4E8C8 CRC64;
MKNKAFGQIM DDAENPGFFK ILRSADLSSE IMRGIPLNFI KSISEEELSA KMLLKVSWGS
SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NDEFLTFTHQ GNMCFTVDIY QIDGKELLTP
RRSATIASSS GRNKREQRNN IYKDVKEEED IESWSESSYP GHKTAESTGR RQRLSLSNKK
AKETEKSKKK KMKVESISYD SQDDSLSLVP EFTLTIKKSY LIFLGIPKMF EELHMPTEAT
MFKIHDPEGK RSWDVMYKFS NNQTRFCAGW IRLAKELGLE IGDVCTFTLI KPTEMLVRVS
K
