Y5850_ARATH
ID Y5850_ARATH Reviewed; 411 AA.
AC Q9FFX1;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=B3 domain-containing protein At5g38500;
GN OrderedLocusNames=At5g38500; ORFNames=MBB18.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
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DR EMBL; AB005231; BAB10140.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94326.1; -; Genomic_DNA.
DR EMBL; AY924844; AAX23919.1; -; Genomic_DNA.
DR RefSeq; NP_198666.1; NM_123211.1.
DR AlphaFoldDB; Q9FFX1; -.
DR PaxDb; Q9FFX1; -.
DR PRIDE; Q9FFX1; -.
DR EnsemblPlants; AT5G38500.1; AT5G38500.1; AT5G38500.
DR GeneID; 833838; -.
DR Gramene; AT5G38500.1; AT5G38500.1; AT5G38500.
DR KEGG; ath:AT5G38500; -.
DR Araport; AT5G38500; -.
DR TAIR; locus:2159903; AT5G38500.
DR HOGENOM; CLU_072178_0_0_1; -.
DR InParanoid; Q9FFX1; -.
DR OMA; SGKDMWS; -.
DR OrthoDB; 741298at2759; -.
DR PhylomeDB; Q9FFX1; -.
DR PRO; PR:Q9FFX1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FFX1; baseline and differential.
DR Genevisible; Q9FFX1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR005508; At2g31720-like.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR PANTHER; PTHR31541; PTHR31541; 2.
DR Pfam; PF03754; DUF313; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..411
FT /note="B3 domain-containing protein At5g38500"
FT /id="PRO_0000375165"
FT DNA_BIND 309..411
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 25..89
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 192..237
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 25..58
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 71..89
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 192..213
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 411 AA; 47393 MW; 0EDBAA1BE7A07C0B CRC64;
MDSGKDMWSR LCLLAETVVM AAEEEEQRRR LLAEKREDSK SQKKTVSEED DSEKRFLSHV
PRKKRSSLVK RQQKPNGVST SSSSLPDLNQ IPIDYETETK QNPSFIERLV CDEEQRVKKG
KSRIIWEEEE EADEDSEKRL FEKNLMKFVG HSQQQQKFET LNGASSSSSF LNLRCYEASL
FLDYNTVESE KTETKVLPNP NYQSSSPSSC LTENDTSRKR RAVEQRKSGK VKKVKVSPLP
RLSTETPEWV FQAMGHMNAD AETPKLIFER TLFKSDVNSN LSRLLIPFQK LIRNDFLTPE
ECRAMQEDKD KDDEDISVGT ILVCQAKQED EDKDDEDIGA GTILVNQRFK MWGLRFKIWG
MEKDSGHGTL NYILNWDWND VVKGNSLKAG DNIGLWTFRC RGVLCFALDT W