Y5872_ARATH
ID Y5872_ARATH Reviewed; 519 AA.
AC O65573; Q8LEH8;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-AUG-1998, sequence version 1.
DT 25-MAY-2022, entry version 133.
DE RecName: Full=SMR domain-containing protein At5g58720 {ECO:0000305};
DE AltName: Full=PRL1-interacting protein PIPC {ECO:0000303|PubMed:10220464};
GN Name=PIPC {ECO:0000303|PubMed:10220464};
GN OrderedLocusNames=At5g58720 {ECO:0000312|Araport:AT5G58720};
GN ORFNames=MZN1.16 {ECO:0000312|EMBL:AAL32830.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND INTERACTION WITH PRL1.
RC STRAIN=cv. Columbia;
RX PubMed=10220464; DOI=10.1073/pnas.96.9.5322;
RA Bhalerao R.P., Salchert K., Bako L., Oekresz L., Szabados L., Muranaka T.,
RA Machida Y., Schell J., Koncz C.;
RT "Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like
RT protein kinases.";
RL Proc. Natl. Acad. Sci. U.S.A. 96:5322-5327(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Interacts with PRL1. {ECO:0000269|PubMed:10220464}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences. {ECO:0000305};
CC Name=1;
CC IsoId=O65573-1; Sequence=Displayed;
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DR EMBL; AJ006021; CAA06808.1; -; mRNA.
DR EMBL; AB020755; BAA97340.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97089.1; -; Genomic_DNA.
DR EMBL; AY062752; AAL32830.1; -; mRNA.
DR EMBL; AY114674; AAM47993.1; -; mRNA.
DR EMBL; AY085409; AAM62636.1; -; mRNA.
DR PIR; T51367; T51367.
DR RefSeq; NP_200680.1; NM_125259.4. [O65573-1]
DR AlphaFoldDB; O65573; -.
DR SMR; O65573; -.
DR IntAct; O65573; 25.
DR STRING; 3702.AT5G58720.1; -.
DR PaxDb; O65573; -.
DR PRIDE; O65573; -.
DR ProteomicsDB; 243170; -. [O65573-1]
DR EnsemblPlants; AT5G58720.1; AT5G58720.1; AT5G58720. [O65573-1]
DR GeneID; 835986; -.
DR Gramene; AT5G58720.1; AT5G58720.1; AT5G58720. [O65573-1]
DR KEGG; ath:AT5G58720; -.
DR Araport; AT5G58720; -.
DR TAIR; locus:2178878; AT5G58720.
DR eggNOG; KOG2401; Eukaryota.
DR HOGENOM; CLU_024477_0_0_1; -.
DR OMA; QKAAMAY; -.
DR OrthoDB; 729801at2759; -.
DR PhylomeDB; O65573; -.
DR PRO; PR:O65573; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; O65573; baseline and differential.
DR Genevisible; O65573; AT.
DR Gene3D; 3.30.1370.110; -; 1.
DR InterPro; IPR013899; DUF1771.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR036063; Smr_dom_sf.
DR Pfam; PF08590; DUF1771; 1.
DR SMART; SM01162; DUF1771; 1.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF160443; SSF160443; 1.
DR PROSITE; PS50828; SMR; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..519
FT /note="SMR domain-containing protein At5g58720"
FT /id="PRO_0000434565"
FT DOMAIN 428..502
FT /note="Smr"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00321"
FT REGION 1..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 92..128
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 25..47
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 93..128
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 52..53
FT /note="NF -> KI (in Ref. 5; AAM62636)"
FT /evidence="ECO:0000305"
FT CONFLICT 208
FT /note="V -> F (in Ref. 5; AAM62636)"
FT /evidence="ECO:0000305"
FT CONFLICT 219
FT /note="D -> N (in Ref. 5; AAM62636)"
FT /evidence="ECO:0000305"
FT CONFLICT 284..286
FT /note="SQD -> FQH (in Ref. 5; AAM62636)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 519 AA; 56654 MW; 1220DB469C4D87F8 CRC64;
MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA
FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS SVASGSSGQE TASTSEYGAG
SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN
GKKAADREKA EQFLSSMLGD DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS
GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR
KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS KQAQRADERA SQDIFVARNK
GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK
LLEREGVRYC EENRGTLLIK LDGGSREFSF LDTESDSDE
