Y6078_ORYSJ
ID Y6078_ORYSJ Reviewed; 199 AA.
AC Q5VS55; Q0DF88;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 16-JUN-2009, sequence version 2.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=B3 domain-containing protein Os06g0107800;
GN OrderedLocusNames=Os06g0107800, LOC_Os06g01860;
GN ORFNames=P0514G12.9, P0644B06.53;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF18485.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP000616; BAD67682.1; -; Genomic_DNA.
DR EMBL; AP001129; BAD67720.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18485.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015642534.1; XM_015787048.1.
DR AlphaFoldDB; Q5VS55; -.
DR SMR; Q5VS55; -.
DR STRING; 4530.OS06T0107800-01; -.
DR PaxDb; Q5VS55; -.
DR PRIDE; Q5VS55; -.
DR EnsemblPlants; Os06t0107800-02; Os06t0107800-02; Os06g0107800.
DR GeneID; 4339875; -.
DR Gramene; Os06t0107800-02; Os06t0107800-02; Os06g0107800.
DR KEGG; osa:4339875; -.
DR eggNOG; ENOG502R5VH; Eukaryota.
DR HOGENOM; CLU_2053591_0_0_1; -.
DR InParanoid; Q5VS55; -.
DR OrthoDB; 1431221at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q5VS55; baseline and differential.
DR Genevisible; Q5VS55; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 3: Inferred from homology;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..199
FT /note="B3 domain-containing protein Os06g0107800"
FT /id="PRO_0000376970"
FT DNA_BIND 37..141
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 13..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 199 AA; 21586 MW; D418CE50AC24ED49 CRC64;
MATIVAWESR NLQLQGGGGG HGGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE
KYFPLGPAAR TSPAGTVLCF EDARGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA
GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL
FGVDLQLRAD ASPALDLQL