ID   Y679_RHOPA              Reviewed;         677 AA.
AC   P61405;
DT   24-MAY-2004, integrated into UniProtKB/Swiss-Prot.
DT   24-MAY-2004, sequence version 1.
DT   03-AUG-2022, entry version 102.
DE   RecName: Full=UPF0313 protein RPA0679 {ECO:0000255|HAMAP-Rule:MF_01251};
GN   OrderedLocusNames=RPA0679;
OS   Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC   Bradyrhizobiaceae; Rhodopseudomonas.
OX   NCBI_TaxID=258594;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-98 / CGA009;
RX   PubMed=14704707; DOI=10.1038/nbt923;
RA   Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L.,
RA   Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R.,
RA   Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C.,
RA   Harrison F.H., Gibson J., Harwood C.S.;
RT   "Complete genome sequence of the metabolically versatile photosynthetic
RT   bacterium Rhodopseudomonas palustris.";
RL   Nat. Biotechnol. 22:55-61(2004).
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01251};
CC       Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3
CC       cysteines and an exchangeable S-adenosyl-L-methionine.
CC       {ECO:0000255|HAMAP-Rule:MF_01251};
CC   -!- SIMILARITY: Belongs to the UPF0313 family. {ECO:0000255|HAMAP-
CC       Rule:MF_01251}.
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DR   EMBL; BX572595; CAE26123.1; -; Genomic_DNA.
DR   RefSeq; WP_011156246.1; NC_005296.1.
DR   AlphaFoldDB; P61405; -.
DR   STRING; 258594.RPA0679; -.
DR   PRIDE; P61405; -.
DR   EnsemblBacteria; CAE26123; CAE26123; RPA0679.
DR   GeneID; 66891693; -.
DR   KEGG; rpa:RPA0679; -.
DR   eggNOG; COG1032; Bacteria.
DR   HOGENOM; CLU_018288_2_0_5; -.
DR   OMA; TCMYYTG; -.
DR   PhylomeDB; P61405; -.
DR   BioCyc; RPAL258594:TX73_RS03505-MON; -.
DR   Proteomes; UP000001426; Chromosome.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR   GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.80.30.20; -; 1.
DR   HAMAP; MF_01251; UPF0313; 1.
DR   InterPro; IPR006638; Elp3/MiaB/NifB.
DR   InterPro; IPR020612; Methylthiotransferase_CS.
DR   InterPro; IPR007197; rSAM.
DR   InterPro; IPR023404; rSAM_horseshoe.
DR   InterPro; IPR022946; UPF0313.
DR   InterPro; IPR024560; UPF0313_C.
DR   InterPro; IPR013704; UPF0313_N.
DR   PANTHER; PTHR32331; PTHR32331; 1.
DR   Pfam; PF11842; DUF3362; 1.
DR   Pfam; PF04055; Radical_SAM; 1.
DR   Pfam; PF08497; Radical_SAM_N; 1.
DR   SFLD; SFLDS00029; Radical_SAM; 1.
DR   SFLD; SFLDG01069; UPF0313; 1.
DR   SMART; SM00729; Elp3; 1.
DR   TIGRFAMs; TIGR03904; SAM_YgiQ; 1.
DR   PROSITE; PS51918; RADICAL_SAM; 1.
PE   3: Inferred from homology;
KW   4Fe-4S; Iron; Iron-sulfur; Metal-binding; Reference proteome;
KW   S-adenosyl-L-methionine.
FT   CHAIN           1..677
FT                   /note="UPF0313 protein RPA0679"
FT                   /id="PRO_0000076392"
FT   DOMAIN          335..601
FT                   /note="Radical SAM core"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01266"
FT   REGION          635..677
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         349
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_note="4Fe-4S-S-AdoMet"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01251"
FT   BINDING         353
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_note="4Fe-4S-S-AdoMet"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01251"
FT   BINDING         356
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_note="4Fe-4S-S-AdoMet"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01251"
SQ   SEQUENCE   677 AA;  75657 MW;  0DA85705064CD43E CRC64;
     MQTSTEVVPP LMSRFRPSAA PRKPAPFLPM SRAEMDKLGW DACDIVLVTG DAYVDHPSFG
     MAIIGRLLES QGFRVGIISQ PDWQSAEPFK ALGKPRVFFG VTGGNMDSMV NRYTADRRLR
     HDDAYTPNGE GGKRPDRCTL VYAQRCREAF KDVPIILGGI EASLRRIAHY DYWSDKVRRS
     VLADAKADLL LYGNAERAVI EVAHRLAAGE APRELEDIRG VALFRRVPEN TIELHADDLD
     AADEGARQVR GDVVIRLPSC EQVEQDKEAY ARASRVLHRE SNPGNARPLV QRHGDRDLWL
     NPPPIPLTTE EMDSVYDLPY ARAPHPSYGN AKIPAWDMIK TSVTIMRGCF GGCTFCSITE
     HEGRIIQSRS EASILQEIEK IRDKTPGFTG VISDIGGPTA NMYRMACKDS NIESSCRKPS
     CVFPDICPNL NTSHDDLIRL YRKVREVKGI KRVMVASGVR YDLAVKSPAY IKELVSHHVG
     GYLKIAPEHT ERGPLDKMMK PGIGTYHRFK QMFEAAAKQA GKQYYLIPYF IAAHPGTTDE
     DMMNLALWLK RNRYRADQVQ TFLPSPMATA TAMYHSGVNP LRGVRHGASE PVEAIKGLRQ
     RRLHKAFLRY HDPDNWPVLR EALKAMGRAD LIGSRPDQLV PAHQPPGTGK AAGTRRPVRG
     DGPKPQRFTT KGVRLVK