Y6944_ORYSJ
ID Y6944_ORYSJ Reviewed; 237 AA.
AC Q69V36; A0A0P0WTZ7;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=B3 domain-containing protein Os06g0194400;
GN OrderedLocusNames=Os06g0194400, LOC_Os06g09420;
GN ORFNames=P0648E08.15, P0698A06.41;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
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DR EMBL; AP003514; BAD35285.1; -; Genomic_DNA.
DR EMBL; AP004280; BAD35642.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18960.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96602.1; -; Genomic_DNA.
DR EMBL; AK102980; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015642147.1; XM_015786661.1.
DR AlphaFoldDB; Q69V36; -.
DR SMR; Q69V36; -.
DR STRING; 4530.OS06T0194400-01; -.
DR PaxDb; Q69V36; -.
DR PRIDE; Q69V36; -.
DR EnsemblPlants; Os06t0194400-01; Os06t0194400-01; Os06g0194400.
DR GeneID; 4340385; -.
DR Gramene; Os06t0194400-01; Os06t0194400-01; Os06g0194400.
DR KEGG; osa:4340385; -.
DR eggNOG; KOG1216; Eukaryota.
DR HOGENOM; CLU_058918_1_0_1; -.
DR InParanoid; Q69V36; -.
DR OMA; LPKHDEY; -.
DR OrthoDB; 1285278at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q69V36; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044837; REM16-like.
DR PANTHER; PTHR31391; PTHR31391; 2.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..237
FT /note="B3 domain-containing protein Os06g0194400"
FT /id="PRO_0000376973"
FT DNA_BIND 139..230
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 38..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 89
FT /note="F -> L (in Ref. 4; AK102980)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 237 AA; 27559 MW; 304C06AF72941C40 CRC64;
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESASKPSP VKQRKRKARA
LPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY
AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD
EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD