Y7633_ORYSJ
ID Y7633_ORYSJ Reviewed; 955 AA.
AC Q0D5G4; A0A0P0X7R8; Q8H349;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 16-JUN-2009, sequence version 2.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=B3 domain-containing protein Os07g0563300;
GN OrderedLocusNames=Os07g0563300, LOC_Os07g37610; ORFNames=OJ1720_F04.105;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC20873.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF21909.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP005296; BAC20873.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF21909.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; BAT02153.1; -; Genomic_DNA.
DR RefSeq; XP_015647112.1; XM_015791626.1.
DR AlphaFoldDB; Q0D5G4; -.
DR SMR; Q0D5G4; -.
DR STRING; 4530.OS07T0563350-01; -.
DR PaxDb; Q0D5G4; -.
DR PRIDE; Q0D5G4; -.
DR EnsemblPlants; Os07t0563300-01; Os07t0563300-01; Os07g0563300.
DR GeneID; 4343608; -.
DR Gramene; Os07t0563300-01; Os07t0563300-01; Os07g0563300.
DR KEGG; osa:4343608; -.
DR eggNOG; ENOG502QPW7; Eukaryota.
DR HOGENOM; CLU_593965_0_0_1; -.
DR InParanoid; Q0D5G4; -.
DR OrthoDB; 186755at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q0D5G4; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR011124; Znf_CW.
DR Pfam; PF02362; B3; 1.
DR Pfam; PF07496; zf-CW; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
DR PROSITE; PS51050; ZF_CW; 1.
PE 3: Inferred from homology;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..955
FT /note="B3 domain-containing protein Os07g0563300"
FT /id="PRO_0000376975"
FT DNA_BIND 453..554
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT ZN_FING 708..758
FT /note="CW-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT REGION 1..81
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 325..392
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 556..642
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 856..955
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..65
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 329..345
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 360..392
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 858..875
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 880..904
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 916..930
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 931..946
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 717
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT BINDING 720
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT BINDING 738
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT BINDING 750
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
SQ SEQUENCE 955 AA; 105720 MW; 972BA396191D7803 CRC64;
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT
PQHQQQQQGP PGHAPPQQRP RICFNAHCKD PKSDGPRRRG WRLRNGDFAE LCDRCYHSFE
HGGFCETFHL EVAGWRNCES CGKRLHCGCI VSVHAFVHLD AGGVECVMCA RKSHAAMAPS
QIWSSSMHMA QNVADRKDNF VKSWRPPAGQ FSSQWRQNNM WSMSTMQSDL QQRLAFEFDR
PSGSEKLLPG RTFIHAHEKK FDDMHDRSTT PAGMNQIMRE RYANGHTQHT TLDPTYAYTL
YHREGTNPNL HDHSHHAGEN DHLTARKGVT SDPCSSVSTT FKLDSHHPSI LKDDPSAVPA
GLSSNFSSAN GPKDHIRIGP TQQQQQMASS SLQKQFYSHS VIDNDFQAQL RNGRPRMDAK
ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP
AISQAEGLPL KVQDATGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI
DPEGKLVMGF RKATNLSAEQ DQPTKPANGV LPPPEANNKV VVPDSSPNAA VPRPIKVNTE
SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPLPVKRKA TSVGPKIKRF HMDSEESMEL
KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR TYFVTDQSGE NHQWAQCEDC
SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LGEMIPIKPG AAKKTKGKVD
TDNIDVSDGL DTLANLAILG EGESLPSQPT TRHPRHRPGC SCIVCIQPPS GKGPKHKQTC
TCNVCMTVRR RFRTLMMRRE KRQQSEKDSG VPRKREPGQS SEPVPQSGSG AHPTSTSSPH
QRADTNGEGP EDMSIDNKRT SSPVKNQIDL NSQPEREDEQ SPKSDATRLL RDNPT
