Y7797_ORYSJ
ID Y7797_ORYSJ Reviewed; 949 AA.
AC Q6Z3U3; A0A0P0XAS4;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=B3 domain-containing protein Os07g0679700;
GN OrderedLocusNames=Os07g0679700, LOC_Os07g48200; ORFNames=OJ1205_F02.12;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
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DR EMBL; AP005243; BAC84102.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22556.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03230.1; -; Genomic_DNA.
DR EMBL; AK101356; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015646777.1; XM_015791291.1.
DR AlphaFoldDB; Q6Z3U3; -.
DR SMR; Q6Z3U3; -.
DR STRING; 4530.OS07T0679700-01; -.
DR PaxDb; Q6Z3U3; -.
DR PRIDE; Q6Z3U3; -.
DR EnsemblPlants; Os07t0679700-01; Os07t0679700-01; Os07g0679700.
DR GeneID; 4344293; -.
DR Gramene; Os07t0679700-01; Os07t0679700-01; Os07g0679700.
DR KEGG; osa:4344293; -.
DR eggNOG; ENOG502QWC1; Eukaryota.
DR HOGENOM; CLU_015907_0_0_1; -.
DR InParanoid; Q6Z3U3; -.
DR OMA; ADANKGH; -.
DR OrthoDB; 186755at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q6Z3U3; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR011124; Znf_CW.
DR Pfam; PF02362; B3; 1.
DR Pfam; PF07496; zf-CW; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
DR PROSITE; PS51050; ZF_CW; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..949
FT /note="B3 domain-containing protein Os07g0679700"
FT /id="PRO_0000376976"
FT DNA_BIND 363..464
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT ZN_FING 623..673
FT /note="CW-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT REGION 218..240
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 777..820
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 881..949
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 778..800
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 804..820
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 881..897
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 904..919
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 632
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT BINDING 635
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT BINDING 653
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT BINDING 665
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00454"
FT CONFLICT 609
FT /note="P -> T (in Ref. 4; AK101356)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 949 AA; 104070 MW; 42E00159DD64FB3B CRC64;
MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV
FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV
PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS
NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL
SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR
PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN
NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG
SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG
SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED
YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS
KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG
NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK
QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF
HPTAVRDEER HGGQPRVSMV SLLEVANRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ
PALVESEERT SNNDGGRVAT AEQPESMAVD EAGDNQPDKA AGDSAAALA
