YAB1_ORYSJ
ID YAB1_ORYSJ Reviewed; 169 AA.
AC Q7XIM7; B7EH95; Q0D8H2; Q9ZSP1;
DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Protein YABBY 1;
DE AltName: Full=OsYABBY1;
DE Short=OsYAB1;
DE AltName: Full=Protein FILAMENTOUS FLOWER 1;
GN Name=YAB1; Synonyms=FIL1; OrderedLocusNames=Os07g0160100, LOC_Os07g06620;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=10323860; DOI=10.1101/gad.13.9.1079;
RA Sawa S., Watanabe K., Goto K., Kanaya E., Morita E.H., Okada K.;
RT "FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis,
RT encodes a protein with a zinc finger and HMG-related domains.";
RL Genes Dev. 13:1079-1088(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], DEVELOPMENTAL STAGE, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA Hirano H.-Y.;
RT "Molecular characterization the YABBY gene family in Oryza sativa and
RT expression analysis of OsYABBY1.";
RL Mol. Genet. Genomics 277:457-468(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, DEVELOPMENTAL STAGE, TISSUE SPECIFICITY, AND SUBCELLULAR
RP LOCATION.
RX PubMed=15604733; DOI=10.1007/s11103-004-2648-y;
RA Jang S., Hur J., Kim S.-J., Han M.-J., Kim S.-R., An G.;
RT "Ectopic expression of OsYAB1 causes extra stamens and carpels in rice.";
RL Plant Mol. Biol. 56:133-143(2004).
RN [8]
RP FUNCTION, AND INDUCTION.
RX PubMed=17369428; DOI=10.1104/pp.107.096586;
RA Dai M., Zhao Y., Ma Q., Hu Y., Hedden P., Zhang Q., Zhou D.-X.;
RT "The rice YABBY1 gene is involved in the feedback regulation of gibberellin
RT metabolism.";
RL Plant Physiol. 144:121-133(2007).
CC -!- FUNCTION: May play a role in floral meristem development and
CC maintenance of stamens, rather than in determining polarity in floral
CC organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:15604733}.
CC -!- TISSUE SPECIFICITY: Preferentially expressed in flowers. Expressed in
CC leaf blades and leaf sheaths. Does not show polar expression pattern.
CC {ECO:0000269|PubMed:15604733}.
CC -!- DEVELOPMENTAL STAGE: Detected throughout panicle development with the
CC strongest expression in immature panicles, and weakest in mature
CC panicles. Abundantly found in the stamen and carpel primordia of young
CC spikelets. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17216490}.
CC -!- MISCELLANEOUS: YAB1, from cultivar indica Minghui 63, was shown by Dai
CC et al (PubMed:17369428) to be involved in regulation of gibberellin
CC (GA) biosynthesis, to bind to the 5'-TCTGTTA-3' GA-responsive element
CC of gibberellin 3-beta-dioxygenase 2 (GA3ox2) promoter and be
CC transiently induced by GA in seedlings. It has to be pointed out that
CC this YAB1 sequence differs from cultivar japonica nipponbare sequence
CC by seven amino acids, of which four are located in the zinc finger
CC domain. {ECO:0000305|PubMed:17369428}.
CC -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF098752; AAC72847.1; -; mRNA.
DR EMBL; AB274013; BAF45802.1; -; mRNA.
DR EMBL; AP003847; BAC79639.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF20851.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT00153.1; -; Genomic_DNA.
DR EMBL; AK070045; BAG91742.1; -; mRNA.
DR PIR; T51586; T51586.
DR RefSeq; XP_015647414.1; XM_015791928.1.
DR AlphaFoldDB; Q7XIM7; -.
DR SMR; Q7XIM7; -.
DR STRING; 4530.OS07T0160100-02; -.
DR PaxDb; Q7XIM7; -.
DR PRIDE; Q7XIM7; -.
DR EnsemblPlants; Os07t0160100-02; Os07t0160100-02; Os07g0160100.
DR GeneID; 4342449; -.
DR Gramene; Os07t0160100-02; Os07t0160100-02; Os07g0160100.
DR KEGG; osa:4342449; -.
DR eggNOG; ENOG502R9GD; Eukaryota.
DR HOGENOM; CLU_071156_0_1_1; -.
DR InParanoid; Q7XIM7; -.
DR OMA; FASEHAC; -.
DR OrthoDB; 1419476at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q7XIM7; baseline and differential.
DR Genevisible; Q7XIM7; OS.
DR GO; GO:0005634; C:nucleus; IDA:Gramene.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0010158; P:abaxial cell fate specification; IBA:GO_Central.
DR GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR GO; GO:0048833; P:specification of floral organ number; IMP:Gramene.
DR Gene3D; 1.10.30.10; -; 1.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR006780; YABBY.
DR PANTHER; PTHR31675; PTHR31675; 1.
DR Pfam; PF04690; YABBY; 1.
DR SUPFAM; SSF47095; SSF47095; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; Differentiation; DNA-binding; Flowering;
KW Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..169
FT /note="Protein YABBY 1"
FT /id="PRO_0000133722"
FT ZN_FING 15..42
FT /note="C4-type"
FT CONFLICT 158
FT /note="S -> N (in Ref. 1; AAC72847)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 169 AA; 18888 MW; 0B3F18EE8A7D3872 CRC64;
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ
DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQV SPIRPPEKRQ RVPSAYNRFI
KEEIQRIKTS NPEISHREAF SAAAKNWAHL PRLHFGLSVA DGGGGGGSN
