YAB2_ORYSJ
ID YAB2_ORYSJ Reviewed; 186 AA.
AC Q10FZ7; Q53KW5; Q9ZSP0;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=Protein YABBY 2;
DE AltName: Full=OsYABBY2;
DE Short=OsYAB2;
DE AltName: Full=Protein FILAMENTOUS FLOWER 2;
GN Name=YAB2; Synonyms=FIL2; OrderedLocusNames=Os03g0650000, LOC_Os03g44710;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=10323860; DOI=10.1101/gad.13.9.1079;
RA Sawa S., Watanabe K., Goto K., Kanaya E., Morita E.H., Okada K.;
RT "FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis,
RT encodes a protein with a zinc finger and HMG-related domains.";
RL Genes Dev. 13:1079-1088(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA Hirano H.-Y.;
RT "Molecular characterization the YABBY gene family in Oryza sativa and
RT expression analysis of OsYABBY1.";
RL Mol. Genet. Genomics 277:457-468(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers.
CC {ECO:0000269|PubMed:17216490}.
CC -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAX95527.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF098753; AAC72848.1; -; mRNA.
DR EMBL; AB274014; BAF45803.1; -; mRNA.
DR EMBL; AC145381; AAX95527.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF97910.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12697.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85507.1; -; Genomic_DNA.
DR PIR; T51588; T51588.
DR RefSeq; XP_015628574.1; XM_015773088.1.
DR RefSeq; XP_015628575.1; XM_015773089.1.
DR RefSeq; XP_015628576.1; XM_015773090.1.
DR AlphaFoldDB; Q10FZ7; -.
DR SMR; Q10FZ7; -.
DR STRING; 4530.OS03T0650000-01; -.
DR PaxDb; Q10FZ7; -.
DR PRIDE; Q10FZ7; -.
DR EnsemblPlants; Os03t0650000-01; Os03t0650000-01; Os03g0650000.
DR EnsemblPlants; Os03t0650000-02; Os03t0650000-02; Os03g0650000.
DR Gramene; Os03t0650000-01; Os03t0650000-01; Os03g0650000.
DR Gramene; Os03t0650000-02; Os03t0650000-02; Os03g0650000.
DR KEGG; osa:4333584; -.
DR eggNOG; ENOG502R9GD; Eukaryota.
DR HOGENOM; CLU_071156_0_1_1; -.
DR InParanoid; Q10FZ7; -.
DR OMA; PGPQKVQ; -.
DR OrthoDB; 1419476at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q10FZ7; differential.
DR Genevisible; Q10FZ7; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0010158; P:abaxial cell fate specification; IBA:GO_Central.
DR GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR Gene3D; 1.10.30.10; -; 1.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR006780; YABBY.
DR PANTHER; PTHR31675; PTHR31675; 1.
DR Pfam; PF04690; YABBY; 1.
DR SUPFAM; SSF47095; SSF47095; 1.
PE 2: Evidence at transcript level;
KW Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..186
FT /note="Protein YABBY 2"
FT /id="PRO_0000308694"
FT ZN_FING 17..44
FT /note="C4-type"
SQ SEQUENCE 186 AA; 21163 MW; 420F09B1C1EED3D7 CRC64;
MSAQIVPAPE HVCYVHCNFC NTIFAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRPP EKRQRVPSAY
NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSHESSKKL DEAIGAPSPQ
KVQRLY
