ID   YAB3_ORYSJ              Reviewed;         313 AA.
AC   Q8L556; A0A0P0XWF6; Q0IWI0; Q7G290;
DT   23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2002, sequence version 1.
DT   03-AUG-2022, entry version 104.
DE   RecName: Full=Protein YABBY 3;
DE   AltName: Full=OsYAB4;
DE   AltName: Full=OsYABBY3;
GN   Name=YAB3; OrderedLocusNames=Os10g0508300, LOC_Os10g36420;
GN   ORFNames=OSJNBb0015K05.5, OSJNBb0091N21.48;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP   NOMENCLATURE.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA   Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA   Hirano H.-Y.;
RT   "Molecular characterization the YABBY gene family in Oryza sativa and
RT   expression analysis of OsYABBY1.";
RL   Mol. Genet. Genomics 277:457-468(2007).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12791992; DOI=10.1126/science.1083523;
RA   Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA   Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA   Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA   Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA   Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA   Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA   Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA   Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA   Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA   Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA   Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA   Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA   Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA   Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA   Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA   Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA   Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT   "In-depth view of structure, activity, and evolution of rice chromosome
RT   10.";
RL   Science 300:1566-1569(2003).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC   -!- TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences.
CC       {ECO:0000269|PubMed:17216490}.
CC   -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAP54543.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAF26935.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AB274015; BAF45804.1; -; mRNA.
DR   EMBL; AC090870; AAM95687.1; -; Genomic_DNA.
DR   EMBL; AC091122; AAM94935.1; -; Genomic_DNA.
DR   EMBL; DP000086; AAP54543.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008216; BAF26935.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014966; BAT11593.1; -; Genomic_DNA.
DR   RefSeq; XP_015613818.1; XM_015758332.1.
DR   AlphaFoldDB; Q8L556; -.
DR   SMR; Q8L556; -.
DR   STRING; 4530.OS10T0508300-00; -.
DR   PaxDb; Q8L556; -.
DR   PRIDE; Q8L556; -.
DR   EnsemblPlants; Os10t0508300-01; Os10t0508300-01; Os10g0508300.
DR   GeneID; 4349074; -.
DR   Gramene; Os10t0508300-01; Os10t0508300-01; Os10g0508300.
DR   KEGG; osa:4349074; -.
DR   eggNOG; ENOG502QQ88; Eukaryota.
DR   HOGENOM; CLU_071156_1_0_1; -.
DR   InParanoid; Q8L556; -.
DR   OMA; LEEITTC; -.
DR   OrthoDB; 1256251at2759; -.
DR   Proteomes; UP000000763; Chromosome 10.
DR   Proteomes; UP000059680; Chromosome 10.
DR   Genevisible; Q8L556; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0010158; P:abaxial cell fate specification; IBA:GO_Central.
DR   GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR   GO; GO:0010154; P:fruit development; IBA:GO_Central.
DR   GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IBA:GO_Central.
DR   GO; GO:2000024; P:regulation of leaf development; IBA:GO_Central.
DR   GO; GO:1902183; P:regulation of shoot apical meristem development; IBA:GO_Central.
DR   Gene3D; 1.10.30.10; -; 1.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR006780; YABBY.
DR   PANTHER; PTHR31675; PTHR31675; 1.
DR   Pfam; PF04690; YABBY; 2.
DR   SUPFAM; SSF47095; SSF47095; 1.
PE   2: Evidence at transcript level;
KW   Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT   CHAIN           1..313
FT                   /note="Protein YABBY 3"
FT                   /id="PRO_0000308695"
FT   ZN_FING         65..92
FT                   /note="C4-type"
FT   REGION          107..149
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          180..221
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        109..131
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        200..214
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   313 AA;  32860 MW;  1B92AB342D192E2C CRC64;
     MSSSSSSSAS SAAAAAFRPA VVQREQQVVE EKFPAAAAAM REMVLPPVAA AAADSEQEQL
     CYVHCHYCDT VLVVSVPSSS LFETVTVRCG HCSSLLTVNM RGLLLPTTAA AAPPPPPPPP
     PPPPPPAAHF PHSLNLAPAN PPHHHSLLDE ISTANSPTQL LLEQHGLGGL MASAASCRNN
     NSPAAAAAPP PPTSQGKAAA KEPSPRTNTA VINRPPEKRQ RVPSAYNRFI KDEIQRIKAG
     NPDISHREAF SAAAKNWAHF PHIHFGLMPD HQGLKKTSLL PQDHQRKDGL LKEGLYAAAA
     AAAAAANMGV APY