ID   YAB4_ORYSJ              Reviewed;         256 AA.
AC   Q6H668; B7EZN7;
DT   23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT   19-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 100.
DE   RecName: Full=Protein YABBY 4;
DE   AltName: Full=OsYAB7;
DE   AltName: Full=OsYABBY4;
GN   Name=YAB4; OrderedLocusNames=Os02g0643200, LOC_Os02g42950;
GN   ORFNames=OJ1282_H11.2, OsJ_007454;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP   NOMENCLATURE.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA   Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA   Hirano H.-Y.;
RT   "Molecular characterization the YABBY gene family in Oryza sativa and
RT   expression analysis of OsYABBY1.";
RL   Mol. Genet. Genomics 277:457-468(2007).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   FUNCTION, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
RX   PubMed=17676337; DOI=10.1007/s00427-007-0173-0;
RA   Liu H.-L., Xu Y.-Y., Xu Z.-H., Chong K.;
RT   "A rice YABBY gene, OsYABBY4, preferentially expresses in developing
RT   vascular tissue.";
RL   Dev. Genes Evol. 217:629-637(2007).
CC   -!- FUNCTION: Seems to be associated with phloem cell differentiation.
CC       {ECO:0000269|PubMed:17676337}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:17676337}.
CC   -!- TISSUE SPECIFICITY: Preferentially expressed in immature organs
CC       containing meristems and organ primordia. Expressed in phloem of
CC       developing vascular tissues of young seedling shoots. Expressed in the
CC       phloem of midvein vasculature of young leaves. Does not show polar
CC       expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490,
CC       ECO:0000269|PubMed:17676337}.
CC   -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
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DR   EMBL; AB274016; BAF45805.1; -; mRNA.
DR   EMBL; AP005291; BAD25781.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF09473.1; -; Genomic_DNA.
DR   EMBL; AP014958; BAS80002.1; -; Genomic_DNA.
DR   EMBL; CM000139; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AK106784; BAG97834.1; -; mRNA.
DR   RefSeq; XP_015622736.1; XM_015767250.1.
DR   AlphaFoldDB; Q6H668; -.
DR   SMR; Q6H668; -.
DR   STRING; 4530.OS02T0643200-01; -.
DR   PaxDb; Q6H668; -.
DR   PRIDE; Q6H668; -.
DR   EnsemblPlants; Os02t0643200-01; Os02t0643200-01; Os02g0643200.
DR   GeneID; 4330130; -.
DR   Gramene; Os02t0643200-01; Os02t0643200-01; Os02g0643200.
DR   KEGG; osa:4330130; -.
DR   eggNOG; ENOG502QQ88; Eukaryota.
DR   HOGENOM; CLU_071156_1_0_1; -.
DR   InParanoid; Q6H668; -.
DR   OMA; SCSDQLC; -.
DR   OrthoDB; 1256251at2759; -.
DR   Proteomes; UP000000763; Chromosome 2.
DR   Proteomes; UP000007752; Chromosome 2.
DR   Proteomes; UP000059680; Chromosome 2.
DR   Genevisible; Q6H668; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0010158; P:abaxial cell fate specification; IBA:GO_Central.
DR   GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR   GO; GO:0010154; P:fruit development; IBA:GO_Central.
DR   GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IBA:GO_Central.
DR   GO; GO:2000024; P:regulation of leaf development; IBA:GO_Central.
DR   GO; GO:1902183; P:regulation of shoot apical meristem development; IBA:GO_Central.
DR   Gene3D; 1.10.30.10; -; 1.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR006780; YABBY.
DR   PANTHER; PTHR31675; PTHR31675; 1.
DR   Pfam; PF04690; YABBY; 1.
DR   SUPFAM; SSF47095; SSF47095; 1.
PE   2: Evidence at transcript level;
KW   Differentiation; Metal-binding; Nucleus; Reference proteome; Zinc;
KW   Zinc-finger.
FT   CHAIN           1..256
FT                   /note="Protein YABBY 4"
FT                   /id="PRO_0000308697"
FT   ZN_FING         30..57
FT                   /note="C4-type"
FT   REGION          127..168
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   256 AA;  27022 MW;  57A2F2F186D07A87 CRC64;
     MSSSSSSSAV FPLDHLAAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL
     LSVNLRGLLL PAPAPAPANQ LHFGPSLLSP TSPHGLLDEV AFQTPSLLME QAASASLSSI
     TGRSSSSCAS NAPAMQMPPA KPVQQEPELP KNAPASANRP PEKRQRVPSA YNRFIKDEIQ
     RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMPDQGFKK TFKPQDGSED ILLKDSLYAA
     AAAAAAAAAN MGVTPF