YAB6_ORYSJ
ID YAB6_ORYSJ Reviewed; 207 AA.
AC Q2QM17;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 84.
DE RecName: Full=Protein YABBY 6;
DE AltName: Full=OsYAB5;
DE AltName: Full=OsYABBY6;
GN Name=YAB6; OrderedLocusNames=Os12g0621100, LOC_Os12g42610;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA Hirano H.-Y.;
RT "Molecular characterization the YABBY gene family in Oryza sativa and
RT expression analysis of OsYABBY1.";
RL Mol. Genet. Genomics 277:457-468(2007).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers.
CC {ECO:0000269|PubMed:17216490}.
CC -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
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DR EMBL; AB274018; BAF45807.1; -; mRNA.
DR EMBL; DP000011; ABA99903.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF30318.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT18137.1; -; Genomic_DNA.
DR RefSeq; XP_015618575.1; XM_015763089.1.
DR AlphaFoldDB; Q2QM17; -.
DR SMR; Q2QM17; -.
DR STRING; 4530.OS12T0621100-01; -.
DR PaxDb; Q2QM17; -.
DR PRIDE; Q2QM17; -.
DR EnsemblPlants; Os12t0621100-01; Os12t0621100-01; Os12g0621100.
DR EnsemblPlants; Os12t0621100-02; Os12t0621100-02; Os12g0621100.
DR GeneID; 4352818; -.
DR Gramene; Os12t0621100-01; Os12t0621100-01; Os12g0621100.
DR Gramene; Os12t0621100-02; Os12t0621100-02; Os12g0621100.
DR KEGG; osa:4352818; -.
DR eggNOG; ENOG502R9GD; Eukaryota.
DR HOGENOM; CLU_071156_0_1_1; -.
DR InParanoid; Q2QM17; -.
DR OMA; KVISCMQ; -.
DR OrthoDB; 1419476at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR ExpressionAtlas; Q2QM17; baseline and differential.
DR Genevisible; Q2QM17; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0010158; P:abaxial cell fate specification; IBA:GO_Central.
DR GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR Gene3D; 1.10.30.10; -; 1.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR006780; YABBY.
DR PANTHER; PTHR31675; PTHR31675; 1.
DR Pfam; PF04690; YABBY; 1.
DR SUPFAM; SSF47095; SSF47095; 1.
PE 2: Evidence at transcript level;
KW Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..207
FT /note="Protein YABBY 6"
FT /id="PRO_0000308700"
FT ZN_FING 16..43
FT /note="C4-type"
SQ SEQUENCE 207 AA; 22778 MW; C8FEF26861788F9F CRC64;
MSAQIAPAEQ VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA
LQDHHHHHLQ ESGLSGCFRD QSGYPEFGFS AASSSSKLRL PPAAAAMVSY SQQNQQLEQA
LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSPG
HEGGKKLVDV DPIPTAPSSK KIQGFYS
