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YAB7_ORYSJ
ID   YAB7_ORYSJ              Reviewed;         169 AA.
AC   A2PZN8; A3BLC7;
DT   23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT   06-MAR-2007, sequence version 1.
DT   03-AUG-2022, entry version 69.
DE   RecName: Full=Protein YABBY 7;
DE   AltName: Full=OsYABBY7;
GN   Name=YAB7; OrderedLocusNames=Os07g0571800, LOC_Os07g38410;
GN   ORFNames=OsJ_023849;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, ALTERNATIVE
RP   SPLICING, GENE FAMILY, AND NOMENCLATURE.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA   Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA   Hirano H.-Y.;
RT   "Molecular characterization the YABBY gene family in Oryza sativa and
RT   expression analysis of OsYABBY1.";
RL   Mol. Genet. Genomics 277:457-468(2007).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=A2PZN8-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=A2PZN8-2; Sequence=VSP_029049, VSP_029050;
CC   -!- TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers.
CC       {ECO:0000269|PubMed:17216490}.
CC   -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC       site. {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
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DR   EMBL; AB274019; BAF45808.1; -; mRNA.
DR   EMBL; AP008213; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AP014963; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CM000144; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_015647119.1; XM_015791633.1. [A2PZN8-1]
DR   AlphaFoldDB; A2PZN8; -.
DR   SMR; A2PZN8; -.
DR   STRING; 4530.OS07T0571800-01; -.
DR   PaxDb; A2PZN8; -.
DR   PRIDE; A2PZN8; -.
DR   GeneID; 9268430; -.
DR   KEGG; osa:9268430; -.
DR   HOGENOM; CLU_2726748_0_0_1; -.
DR   InParanoid; A2PZN8; -.
DR   OrthoDB; 1464478at2759; -.
DR   Proteomes; UP000000763; Chromosome 7.
DR   Proteomes; UP000007752; Chromosome 7.
DR   Proteomes; UP000059680; Chromosome 7.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR   GO; GO:0048481; P:plant ovule development; IBA:GO_Central.
DR   GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IBA:GO_Central.
DR   Gene3D; 1.10.30.10; -; 1.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR006780; YABBY.
DR   PANTHER; PTHR31675; PTHR31675; 1.
DR   Pfam; PF04690; YABBY; 1.
DR   SUPFAM; SSF47095; SSF47095; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Metal-binding; Nucleus; Reference proteome; Zinc;
KW   Zinc-finger.
FT   CHAIN           1..169
FT                   /note="Protein YABBY 7"
FT                   /id="PRO_0000308701"
FT   ZN_FING         21..48
FT                   /note="C4-type"
FT   REGION          63..122
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        84..99
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   VAR_SEQ         154..161
FT                   /note="WAHLPRIQ -> NPAEARQG (in isoform 2)"
FT                   /evidence="ECO:0000305"
FT                   /id="VSP_029049"
FT   VAR_SEQ         162..169
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000305"
FT                   /id="VSP_029050"
SQ   SEQUENCE   169 AA;  18036 MW;  35A48C8A3E74152D CRC64;
     MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS
     PVSASIELTP QELDAGPPPG EYSDESSGDD REGRDAEDDA PAPAAAAVAN KPPGRKQRTP
     SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI QQKRGRDSC
 
 
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