ID   YABDL_ORYSJ             Reviewed;         194 AA.
AC   Q76EJ0; Q10Q00;
DT   01-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 99.
DE   RecName: Full=Protein DROOPING LEAF;
DE   AltName: Full=Protein CRABS CLAW homolog;
DE            Short=Protein CRC homolog;
GN   Name=DL; OrderedLocusNames=Os03g0215200, LOC_Os03g11600;
GN   ORFNames=OsJ_009541;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], FUNCTION, DEVELOPMENTAL STAGE,
RP   AND MUTAGENESIS OF GLU-118.
RC   STRAIN=cv. Taichung 65;
RX   PubMed=14729915; DOI=10.1105/tpc.018044;
RA   Yamaguchi T., Nagasawa N., Kawasaki S., Matsuoka M., Nagato Y.,
RA   Hirano H.-Y.;
RT   "The YABBY gene DROOPING LEAF regulates carpel specification and midrib
RT   development in Oryza sativa.";
RL   Plant Cell 16:500-509(2004).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RA   Zhang H., Paek N.-C.;
RT   "DROOPING LEAF gene in rice: a homolog of Arabidopsis CRC gene containing
RT   an additional alpha-helix domain in C-terminus.";
RL   Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [6]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [8]
RP   IDENTIFICATION OF DROOPING LEAF PHENOTYPE.
RC   STRAIN=cv. Taichung 65;
RX   PubMed=12506001; DOI=10.1242/dev.00294;
RA   Nagasawa N., Miyoshi M., Sano Y., Satoh H., Hirano H.-Y., Sakai H.,
RA   Nagato Y.;
RT   "SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in
RT   rice.";
RL   Development 130:705-718(2003).
RN   [9]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=17216490; DOI=10.1007/s00438-006-0202-0;
RA   Toriba T., Harada K., Takamura A., Nakamura H., Ichikawa H., Suzaki T.,
RA   Hirano H.-Y.;
RT   "Molecular characterization the YABBY gene family in Oryza sativa and
RT   expression analysis of OsYABBY1.";
RL   Mol. Genet. Genomics 277:457-468(2007).
CC   -!- FUNCTION: Regulates carpel specification in flower development. Severe
CC       or intermediate mutation in DL causes complete or partial homeotic
CC       conversion of carpels into stamens without affecting the identities of
CC       other floral organs. Interacts antagonistically with class B genes and
CC       controls floral meristem determinacy. Regulates midrib formation in
CC       leaves probably by inducing cell proliferation in the central region of
CC       the leaf. {ECO:0000269|PubMed:14729915}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- DEVELOPMENTAL STAGE: Detected during flower and leaf development.
CC       Expression in the flower meristem in the early stage of flower
CC       development. When carpel primordia begin to form, specific and uniform
CC       expression in carpel primordia. Expression in the central region of the
CC       leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly
CC       detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
CC   -!- SIMILARITY: Belongs to the YABBY family. {ECO:0000305}.
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DR   EMBL; AB106553; BAD06551.1; -; mRNA.
DR   EMBL; AB106554; BAD06552.1; -; Genomic_DNA.
DR   EMBL; AY494713; AAR84663.1; -; mRNA.
DR   EMBL; DP000009; ABF94635.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF11289.1; -; Genomic_DNA.
DR   EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CM000140; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_015630076.1; XM_015774590.1.
DR   AlphaFoldDB; Q76EJ0; -.
DR   SMR; Q76EJ0; -.
DR   STRING; 4530.OS03T0215200-00; -.
DR   PaxDb; Q76EJ0; -.
DR   PRIDE; Q76EJ0; -.
DR   GeneID; 4332058; -.
DR   KEGG; osa:4332058; -.
DR   eggNOG; ENOG502QVCI; Eukaryota.
DR   InParanoid; Q76EJ0; -.
DR   PlantReactome; R-OSA-9609102; Flower development.
DR   PlantReactome; R-OSA-9627657; Regulation of leaf development.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000007752; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 3.
DR   Genevisible; Q76EJ0; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0048440; P:carpel development; IMP:Gramene.
DR   GO; GO:0045165; P:cell fate commitment; IBA:GO_Central.
DR   GO; GO:0010582; P:floral meristem determinacy; IBA:GO_Central.
DR   GO; GO:0048366; P:leaf development; IMP:Gramene.
DR   GO; GO:0010022; P:meristem determinacy; IMP:Gramene.
DR   GO; GO:0010094; P:specification of carpel identity; TAS:AgBase.
DR   GO; GO:0048479; P:style development; IBA:GO_Central.
DR   Gene3D; 1.10.30.10; -; 1.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR006780; YABBY.
DR   PANTHER; PTHR31675; PTHR31675; 1.
DR   Pfam; PF04690; YABBY; 1.
DR   SUPFAM; SSF47095; SSF47095; 1.
PE   1: Evidence at protein level;
KW   Developmental protein; Differentiation; DNA-binding; Flowering;
KW   Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT   CHAIN           1..194
FT                   /note="Protein DROOPING LEAF"
FT                   /id="PRO_0000133723"
FT   ZN_FING         15..42
FT                   /note="C4-type"
FT   REGION          83..103
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MUTAGEN         118
FT                   /note="E->K: In dl-4; weak drooping leaf phenotype."
FT                   /evidence="ECO:0000269|PubMed:14729915"
SQ   SEQUENCE   194 AA;  21664 MW;  EC66452994340672 CRC64;
     MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSFLSP RPPMVQPLSP
     TDHPLGPFQG PCTDCRRNQP LPLVSPTSNE GSPRAPFVVK PPEKKHRLPS AYNRFMREEI
     QRIKAAKPDI PHREAFSMAA KNWAKCDPRC SSTVSTSNSN PEPRVVAAPI PHQERANEQV
     VESFDIFKQM ERSG