YAO_ORYSJ
ID YAO_ORYSJ Reviewed; 511 AA.
AC Q75LV5; A0A0P0W0D2;
DT 27-MAY-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 134.
DE RecName: Full=U3 snoRNP-associated protein-like YAOH {ECO:0000305};
DE AltName: Full=Protein YAO homolog {ECO:0000305};
GN OrderedLocusNames=Os03g0625900 {ECO:0000312|EMBL:BAF12612.1},
GN LOC_Os03g42770 {ECO:0000312|EMBL:ABF97710.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Component of a nucleolar small nuclear ribonucleoprotein
CC particle (snoRNP) thought to participate in the processing and
CC modification of pre-ribosomal RNA (By similarity). Essential for
CC embryogenesis (By similarity). {ECO:0000250|UniProtKB:O43818,
CC ECO:0000250|UniProtKB:Q9M0V4}.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000250|UniProtKB:Q9M0V4}.
CC -!- SIMILARITY: Belongs to the WD repeat RRP9 family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC091246; AAR01650.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97710.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12612.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85340.1; -; Genomic_DNA.
DR EMBL; AK101109; BAG94918.1; -; mRNA.
DR RefSeq; XP_015628144.1; XM_015772658.1.
DR AlphaFoldDB; Q75LV5; -.
DR SMR; Q75LV5; -.
DR STRING; 4530.OS03T0625900-01; -.
DR PaxDb; Q75LV5; -.
DR PRIDE; Q75LV5; -.
DR EnsemblPlants; Os03t0625900-01; Os03t0625900-01; Os03g0625900.
DR GeneID; 4333495; -.
DR Gramene; Os03t0625900-01; Os03t0625900-01; Os03g0625900.
DR KEGG; osa:4333495; -.
DR eggNOG; KOG0299; Eukaryota.
DR HOGENOM; CLU_014017_1_1_1; -.
DR InParanoid; Q75LV5; -.
DR OMA; RIWKITE; -.
DR OrthoDB; 948159at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q75LV5; OS.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0032040; C:small-subunit processome; IBA:GO_Central.
DR GO; GO:0030515; F:snoRNA binding; IBA:GO_Central.
DR GO; GO:0034511; F:U3 snoRNA binding; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 2.130.10.10; -; 1.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR039241; Rrp9-like.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR19865; PTHR19865; 1.
DR Pfam; PF00400; WD40; 3.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF50978; SSF50978; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 3.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Repeat; Ribonucleoprotein; RNA-binding;
KW rRNA processing; WD repeat.
FT CHAIN 1..511
FT /note="U3 snoRNP-associated protein-like YAOH"
FT /id="PRO_0000433092"
FT REPEAT 158..197
FT /note="WD 1"
FT /evidence="ECO:0000255"
FT REPEAT 217..256
FT /note="WD 2"
FT /evidence="ECO:0000255"
FT REPEAT 259..298
FT /note="WD 3"
FT /evidence="ECO:0000255"
FT REPEAT 301..339
FT /note="WD 4"
FT /evidence="ECO:0000255"
FT REPEAT 342..380
FT /note="WD 5"
FT /evidence="ECO:0000255"
FT REPEAT 412..451
FT /note="WD 6"
FT /evidence="ECO:0000255"
FT REPEAT 457..497
FT /note="WD 7"
FT /evidence="ECO:0000255"
FT REGION 1..117
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 18..45
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 65..79
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 80..107
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 511 AA; 57028 MW; 7F4BA97CBE8BE1CA CRC64;
MAPRPRKRVS RPKPRATSRG RGGGDEDPFF ESEPKRRRGG GRDEDIESED SDLEGVAAAA
AGGVGDDGEE EEEEEEEQET AGEKKMRIAK ELLKKVTDAA RRRREDDEDE DEGEEAGRRR
VADILLKRQF EESGRKRMEL ADRILQPDPE DGFKMLVKHR QPVTAVVLSK DSDKGFSASK
DGVIVHWDVE TGKSEKYLWP SENVLVSHHA KPPLSAKRSK QVLALAVSAD GRYLASGGLD
RHIHLWDVRS REHIQAFSGH RGAISCLSFG PDSSELFSGS FDRKIMQWNA EDRTYMNCLF
GHQNEVLTMD ALSKDRLLTV ARDRTMHLWK IPEESQLLFR APATASLECC CFIDDKEFLT
GSDDGSVELW SIMRKKPTHI IRNAHPVFRN NLNSLENNVE ENGIHKPESV SSAQSWVSAI
AARRGSDLAA SGAANGSVRL WAIEPDSKGI RPLFSLRLDG FVNSLAIPKS GRFIVAGVGQ
EPRLGRWGRV RSAQNGVVIH PIRLKEESED L
