YBAQ_ECOLI
ID YBAQ_ECOLI Reviewed; 113 AA.
AC P0A9T6; P77303; Q2MBU4; Q47008;
DT 19-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2005, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YbaQ;
GN Name=ybaQ; OrderedLocusNames=b0483, JW0472;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RA Das S., Chuang E., Vulpe C., Goldman J., Gitschier J.;
RL Submitted (JUN-1996) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RA Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT "Sequence of minutes 4-25 of Escherichia coli.";
RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
CC -!- SIMILARITY: Belongs to the VapA/VapI family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB40237.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; U58330; AAB02269.1; -; Genomic_DNA.
DR EMBL; U82664; AAB40237.1; ALT_INIT; Genomic_DNA.
DR EMBL; U00096; AAC73585.2; -; Genomic_DNA.
DR EMBL; AP009048; BAE76262.1; -; Genomic_DNA.
DR PIR; B64779; B64779.
DR RefSeq; NP_415016.4; NC_000913.3.
DR RefSeq; WP_000806442.1; NZ_SSZK01000009.1.
DR PDB; 2EBY; X-ray; 2.25 A; A/B=1-113.
DR PDBsum; 2EBY; -.
DR AlphaFoldDB; P0A9T6; -.
DR SMR; P0A9T6; -.
DR BioGRID; 4261982; 17.
DR IntAct; P0A9T6; 4.
DR STRING; 511145.b0483; -.
DR PaxDb; P0A9T6; -.
DR PRIDE; P0A9T6; -.
DR EnsemblBacteria; AAC73585; AAC73585; b0483.
DR EnsemblBacteria; BAE76262; BAE76262; BAE76262.
DR GeneID; 948800; -.
DR KEGG; ecj:JW0472; -.
DR KEGG; eco:b0483; -.
DR PATRIC; fig|511145.12.peg.503; -.
DR EchoBASE; EB3034; -.
DR eggNOG; COG3093; Bacteria.
DR HOGENOM; CLU_140230_3_2_6; -.
DR InParanoid; P0A9T6; -.
DR OMA; GNSAKFW; -.
DR PhylomeDB; P0A9T6; -.
DR BioCyc; EcoCyc:G6259-MON; -.
DR EvolutionaryTrace; P0A9T6; -.
DR PRO; PR:P0A9T6; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; -; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR013430; Toxin_antidote_HigA.
DR PANTHER; PTHR36924; PTHR36924; 1.
DR Pfam; PF01381; HTH_3; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; SSF47413; 1.
DR TIGRFAMs; TIGR02607; antidote_HigA; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 1: Evidence at protein level;
KW 3D-structure; DNA-binding; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..113
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YbaQ"
FT /id="PRO_0000149753"
FT DOMAIN 16..70
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00257"
FT DNA_BIND 27..46
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00257"
FT HELIX 11..18
FT /evidence="ECO:0007829|PDB:2EBY"
FT TURN 19..24
FT /evidence="ECO:0007829|PDB:2EBY"
FT HELIX 27..34
FT /evidence="ECO:0007829|PDB:2EBY"
FT HELIX 38..45
FT /evidence="ECO:0007829|PDB:2EBY"
FT HELIX 53..63
FT /evidence="ECO:0007829|PDB:2EBY"
FT HELIX 67..83
FT /evidence="ECO:0007829|PDB:2EBY"
FT HELIX 86..94
FT /evidence="ECO:0007829|PDB:2EBY"
FT HELIX 98..107
FT /evidence="ECO:0007829|PDB:2EBY"
SQ SEQUENCE 113 AA; 13171 MW; 8F9881044E6E21F9 CRC64;
MKQATRKPTT PGDILLYEYL EPLDLKINEL AELLHVHRNS VSALINNNRK LTTEMAFRLA
KVFDTTVDFW LNLQAAVDLW EVENNMRTQE ELGRIETVAE YLARREERAK KVA
