YBBH_BACSU
ID YBBH_BACSU Reviewed; 283 AA.
AC Q45581; Q45580;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 03-JUL-2003, sequence version 3.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YbbH;
GN Name=ybbH; OrderedLocusNames=BSU01690;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9274029; DOI=10.1099/00221287-143-8-2763;
RA Liu H., Haga K., Yasumoto K., Ohashi Y., Yoshikawa H., Takahashi H.;
RT "Sequence and analysis of a 31 kb segment of the Bacillus subtilis
RT chromosome in the area of the rrnH and rrnG operons.";
RL Microbiology 143:2763-2767(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA19503.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AB002150; BAA19503.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL009126; CAB11945.1; -; Genomic_DNA.
DR PIR; C69744; C69744.
DR RefSeq; NP_388050.1; NC_000964.3.
DR RefSeq; WP_003234966.1; NZ_JNCM01000030.1.
DR PDB; 2O3F; X-ray; 1.75 A; A/B/C=1-108.
DR PDBsum; 2O3F; -.
DR AlphaFoldDB; Q45581; -.
DR SMR; Q45581; -.
DR STRING; 224308.BSU01690; -.
DR PaxDb; Q45581; -.
DR PRIDE; Q45581; -.
DR DNASU; 938885; -.
DR EnsemblBacteria; CAB11945; CAB11945; BSU_01690.
DR GeneID; 938885; -.
DR KEGG; bsu:BSU01690; -.
DR PATRIC; fig|224308.179.peg.175; -.
DR eggNOG; COG1737; Bacteria.
DR InParanoid; Q45581; -.
DR OMA; QDLEHAP; -.
DR PhylomeDB; Q45581; -.
DR BioCyc; BSUB:BSU01690-MON; -.
DR EvolutionaryTrace; Q45581; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0097367; F:carbohydrate derivative binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:1901135; P:carbohydrate derivative metabolic process; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd05013; SIS_RpiR; 1.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR000281; HTH_RpiR.
DR InterPro; IPR035472; RpiR-like_SIS.
DR InterPro; IPR001347; SIS_dom.
DR InterPro; IPR046348; SIS_dom_sf.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR Pfam; PF01418; HTH_6; 1.
DR Pfam; PF01380; SIS; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR SUPFAM; SSF53697; SSF53697; 1.
DR PROSITE; PS51071; HTH_RPIR; 1.
DR PROSITE; PS51464; SIS; 1.
PE 1: Evidence at protein level;
KW 3D-structure; DNA-binding; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..283
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YbbH"
FT /id="PRO_0000068629"
FT DOMAIN 3..79
FT /note="HTH rpiR-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00390"
FT DOMAIN 123..264
FT /note="SIS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00797"
FT DNA_BIND 39..58
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00390"
FT HELIX 5..12
FT /evidence="ECO:0007829|PDB:2O3F"
FT HELIX 18..29
FT /evidence="ECO:0007829|PDB:2O3F"
FT HELIX 39..45
FT /evidence="ECO:0007829|PDB:2O3F"
FT HELIX 50..57
FT /evidence="ECO:0007829|PDB:2O3F"
FT HELIX 65..68
FT /evidence="ECO:0007829|PDB:2O3F"
FT HELIX 71..77
FT /evidence="ECO:0007829|PDB:2O3F"
FT HELIX 79..81
FT /evidence="ECO:0007829|PDB:2O3F"
SQ SEQUENCE 283 AA; 30709 MW; 690C68B78BF19032 CRC64;
MATGGLAIIQ SMKHKLPPSE RKLADYILAH PHKAIESTVN EISALANSSD AAVIRLCKSL
GLKGFQDLKM RVAGDLAKPT FQGYRDIVPH EPLPSISEKT AGNAIQAIQD TSDLMDYKEL
ERAVSLLLKA HTVHFIGLGA SGIVAKDAQQ KWLRIHKQAT AFTDTHLVAS LIANADKDDI
VFAISFSGET QEIVELFAMA KEKGITTISL TQFSQTSVSA LADVPLYTAH SNEALIRSAA
TSSRLAQLFI IDVLFLGMAA EQYETTTGYI DKTRAAIQSM RIK
