YBC8_YEAST
ID YBC8_YEAST Reviewed; 106 AA.
AC P38202; D6VPX2;
DT 01-OCT-1994, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-1994, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=UPF0642 protein YBL028C;
GN OrderedLocusNames=YBL028C; ORFNames=YBL0423;
OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC Saccharomycetales; Saccharomycetaceae; Saccharomyces.
OX NCBI_TaxID=559292;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 204508 / S288c;
RX PubMed=7725803; DOI=10.1002/yea.320101217;
RA van Dyck L., Jonniaux J.-L., Barreiros T.D.M., Kleine K., Goffeau A.;
RT "Analysis of a 17.4 kb DNA segment of yeast chromosome II encompassing the
RT ribosomal protein L19 as well as proteins with homologies to components of
RT the hnRNP and snRNP complexes and to the human proliferation-associated
RT p120 antigen.";
RL Yeast 10:1663-1673(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 204508 / S288c;
RX PubMed=7813418; DOI=10.1002/j.1460-2075.1994.tb06923.x;
RA Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C.,
RA Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M.,
RA Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M.,
RA Cziepluch C., Demolis N., Delaveau T., Doignon F., Domdey H.,
RA Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D.,
RA Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N.,
RA Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J.,
RA Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C.,
RA Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P.,
RA Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y.,
RA Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F.,
RA Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E.,
RA Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M.,
RA Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B.,
RA Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L.,
RA Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M.,
RA Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S.,
RA Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K.,
RA Mewes H.-W., Kleine K.;
RT "Complete DNA sequence of yeast chromosome II.";
RL EMBO J. 13:5795-5809(1994).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=ATCC 204508 / S288c;
RX PubMed=24374639; DOI=10.1534/g3.113.008995;
RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.;
RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now.";
RL G3 (Bethesda) 4:389-398(2014).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 204508 / S288c;
RX PubMed=17322287; DOI=10.1101/gr.6037607;
RA Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F.,
RA Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J.,
RA Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J.,
RA Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D.,
RA LaBaer J.;
RT "Approaching a complete repository of sequence-verified protein-encoding
RT clones for Saccharomyces cerevisiae.";
RL Genome Res. 17:536-543(2007).
RN [5]
RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
RX PubMed=14562106; DOI=10.1038/nature02046;
RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N.,
RA O'Shea E.K., Weissman J.S.;
RT "Global analysis of protein expression in yeast.";
RL Nature 425:737-741(2003).
CC -!- MISCELLANEOUS: Present with 6210 molecules/cell in log phase SD medium.
CC {ECO:0000269|PubMed:14562106}.
CC -!- SIMILARITY: Belongs to the UPF0642 family. {ECO:0000305}.
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DR EMBL; X77291; CAA54499.1; -; Genomic_DNA.
DR EMBL; Z35789; CAA84847.1; -; Genomic_DNA.
DR EMBL; AY558461; AAS56787.1; -; Genomic_DNA.
DR EMBL; BK006936; DAA07092.1; -; Genomic_DNA.
DR PIR; S45762; S45762.
DR RefSeq; NP_009525.1; NM_001178268.1.
DR PDB; 3JCT; EM; 3.08 A; z=1-106.
DR PDB; 6ELZ; EM; 3.30 A; z=1-106.
DR PDB; 6EM1; EM; 3.60 A; z=1-106.
DR PDB; 6EM5; EM; 4.30 A; z=1-106.
DR PDB; 6FT6; EM; 3.90 A; z=1-106.
DR PDB; 6M62; EM; 3.20 A; z=1-106.
DR PDB; 6N8J; EM; 3.50 A; z=1-106.
DR PDB; 6N8K; EM; 3.60 A; z=1-106.
DR PDB; 6N8L; EM; 3.60 A; z=1-106.
DR PDB; 6YLG; EM; 3.00 A; z=1-106.
DR PDB; 6YLH; EM; 3.10 A; z=1-106.
DR PDB; 6YLX; EM; 3.90 A; z=1-106.
DR PDB; 6YLY; EM; 3.80 A; z=1-106.
DR PDB; 7BT6; EM; 3.12 A; z=1-106.
DR PDB; 7BTB; EM; 3.22 A; z=1-106.
DR PDB; 7OH3; EM; 3.40 A; z=1-106.
DR PDB; 7OHQ; EM; 3.10 A; z=1-106.
DR PDBsum; 3JCT; -.
DR PDBsum; 6ELZ; -.
DR PDBsum; 6EM1; -.
DR PDBsum; 6EM5; -.
DR PDBsum; 6FT6; -.
DR PDBsum; 6M62; -.
DR PDBsum; 6N8J; -.
DR PDBsum; 6N8K; -.
DR PDBsum; 6N8L; -.
DR PDBsum; 6YLG; -.
DR PDBsum; 6YLH; -.
DR PDBsum; 6YLX; -.
DR PDBsum; 6YLY; -.
DR PDBsum; 7BT6; -.
DR PDBsum; 7BTB; -.
DR PDBsum; 7OH3; -.
DR PDBsum; 7OHQ; -.
DR AlphaFoldDB; P38202; -.
DR SMR; P38202; -.
DR BioGRID; 32670; 37.
DR IntAct; P38202; 2.
DR MINT; P38202; -.
DR STRING; 4932.YBL028C; -.
DR MaxQB; P38202; -.
DR PaxDb; P38202; -.
DR PRIDE; P38202; -.
DR EnsemblFungi; YBL028C_mRNA; YBL028C; YBL028C.
DR GeneID; 852253; -.
DR KEGG; sce:YBL028C; -.
DR SGD; S000000124; YBL028C.
DR VEuPathDB; FungiDB:YBL028C; -.
DR eggNOG; ENOG502S5RC; Eukaryota.
DR HOGENOM; CLU_125052_1_0_1; -.
DR InParanoid; P38202; -.
DR OMA; GWRDARH; -.
DR BioCyc; YEAST:G3O-28931-MON; -.
DR PRO; PR:P38202; -.
DR Proteomes; UP000002311; Chromosome II.
DR RNAct; P38202; protein.
DR GO; GO:0005730; C:nucleolus; HDA:SGD.
DR GO; GO:0005634; C:nucleus; HDA:SGD.
DR GO; GO:0030687; C:preribosome, large subunit precursor; HDA:SGD.
DR InterPro; IPR019434; UPF0642.
DR Pfam; PF10338; DUF2423; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..106
FT /note="UPF0642 protein YBL028C"
FT /id="PRO_0000202462"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 52..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..84
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 85..106
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 106 AA; 12401 MW; 93E5CDDB587B3A3C CRC64;
MAKSLRASSH LNAKSVKRRG VFQKAVDARE QRISDKLKED LLKQKLEDLK KKEEQGIDMD
VDEKKSNEEA PRKKISTSGW RDGRHHTYKK AKLMKQSKKK TSFTRF
