ID   YBCM_ECOLI              Reviewed;         265 AA.
AC   P77634; Q2MBN5;
DT   01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT   01-FEB-1997, sequence version 1.
DT   03-AUG-2022, entry version 143.
DE   RecName: Full=Uncharacterized HTH-type transcriptional regulator YbcM;
GN   Name=ybcM; OrderedLocusNames=b0546, JW0534;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RA   Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA   Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA   Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT   "Sequence of minutes 4-25 of Escherichia coli.";
RL   Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
CC   -!- MISCELLANEOUS: Encoded by the cryptic lambdoid prophage DLP12.
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DR   EMBL; U82598; AAB40743.1; -; Genomic_DNA.
DR   EMBL; U00096; AAC73647.1; -; Genomic_DNA.
DR   EMBL; AP009048; BAE76321.1; -; Genomic_DNA.
DR   PIR; H64786; H64786.
DR   RefSeq; NP_415078.1; NC_000913.3.
DR   RefSeq; WP_000881075.1; NZ_LN832404.1.
DR   AlphaFoldDB; P77634; -.
DR   SMR; P77634; -.
DR   BioGRID; 4261567; 13.
DR   IntAct; P77634; 11.
DR   STRING; 511145.b0546; -.
DR   jPOST; P77634; -.
DR   PaxDb; P77634; -.
DR   PRIDE; P77634; -.
DR   EnsemblBacteria; AAC73647; AAC73647; b0546.
DR   EnsemblBacteria; BAE76321; BAE76321; BAE76321.
DR   GeneID; 60668128; -.
DR   GeneID; 945163; -.
DR   KEGG; ecj:JW0534; -.
DR   KEGG; eco:b0546; -.
DR   PATRIC; fig|1411691.4.peg.1731; -.
DR   EchoBASE; EB3394; -.
DR   eggNOG; COG2207; Bacteria.
DR   HOGENOM; CLU_071578_1_1_6; -.
DR   InParanoid; P77634; -.
DR   OMA; CGYQSEG; -.
DR   PhylomeDB; P77634; -.
DR   BioCyc; EcoCyc:G6302-MON; -.
DR   PRO; PR:P77634; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR   GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR   GO; GO:0006974; P:cellular response to DNA damage stimulus; IMP:EcoCyc.
DR   GO; GO:0046677; P:response to antibiotic; IMP:EcoCyc.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR018060; HTH_AraC.
DR   Pfam; PF12833; HTH_18; 1.
DR   SMART; SM00342; HTH_ARAC; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE   4: Predicted;
KW   DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT   CHAIN           1..265
FT                   /note="Uncharacterized HTH-type transcriptional regulator
FT                   YbcM"
FT                   /id="PRO_0000194614"
FT   DOMAIN          165..262
FT                   /note="HTH araC/xylS-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT   DNA_BIND        182..203
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT   DNA_BIND        229..252
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
SQ   SEQUENCE   265 AA;  30841 MW;  9500BB4411514073 CRC64;
     MLARGKTNLK IEEIRMHKHH EIHRVKPLMP ALCRIRQGKK VINWETHTLT VDNNQIILFP
     CGYEFYIENY PEAGLYLAEM LYLPIDLIES FQKLYTVTDQ IRNKTSFFLP QNPELIYCWE
     QLKTSVSRGF STKIQEHLAM GVLLSLGVNH VNHLLLSYSK QSLISRCYNL LLSEPGTKWT
     ANKVARYLYI SVSTLHRRLA SEGVSFQSIL DDVRLNNALS AIQTTVKPIS EIARENGYKC
     PSRFTERFHN RFNITPREIR KASRE