YBED_ECOLI
ID YBED_ECOLI Reviewed; 87 AA.
AC P0A8J4; P30977;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2005, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=UPF0250 protein YbeD;
GN Name=ybeD; OrderedLocusNames=b0631, JW0626;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8444795; DOI=10.1128/jb.175.5.1325-1336.1993;
RA Reed K.E., Cronan J.E. Jr.;
RT "Lipoic acid metabolism in Escherichia coli: sequencing and functional
RT characterization of the lipA and lipB genes.";
RL J. Bacteriol. 175:1325-1336(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA Horiuchi T.;
RT "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 12.7-28.0 min region on the linkage map.";
RL DNA Res. 3:137-155(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RA Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT "Sequence of minutes 4-25 of Escherichia coli.";
RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [6]
RP STRUCTURE BY NMR.
RX PubMed=15547281; DOI=10.1128/jb.186.23.8083-8088.2004;
RA Kozlov G., Elias D., Semesi A., Yee A., Cygler M., Gehring K.;
RT "Structural similarity of YbeD protein from Escherichia coli to allosteric
RT regulatory domains.";
RL J. Bacteriol. 186:8083-8088(2004).
CC -!- INTERACTION:
CC P0A8J4; P0CE47: tufA; NbExp=3; IntAct=EBI-370708, EBI-301077;
CC -!- SIMILARITY: Belongs to the UPF0250 family. {ECO:0000305}.
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DR EMBL; L07636; AAA66341.1; -; Genomic_DNA.
DR EMBL; U82598; AAB40831.1; -; Genomic_DNA.
DR EMBL; U00096; AAC73732.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA35274.1; -; Genomic_DNA.
DR PIR; E64797; E64797.
DR RefSeq; NP_415164.1; NC_000913.3.
DR RefSeq; WP_000850550.1; NZ_STEB01000031.1.
DR PDB; 1RWU; NMR; -; A=1-87.
DR PDBsum; 1RWU; -.
DR AlphaFoldDB; P0A8J4; -.
DR SMR; P0A8J4; -.
DR BioGRID; 4260679; 235.
DR DIP; DIP-31839N; -.
DR IntAct; P0A8J4; 10.
DR STRING; 511145.b0631; -.
DR jPOST; P0A8J4; -.
DR PaxDb; P0A8J4; -.
DR PRIDE; P0A8J4; -.
DR DNASU; 945220; -.
DR EnsemblBacteria; AAC73732; AAC73732; b0631.
DR EnsemblBacteria; BAA35274; BAA35274; BAA35274.
DR GeneID; 67416327; -.
DR GeneID; 945220; -.
DR KEGG; ecj:JW0626; -.
DR KEGG; eco:b0631; -.
DR PATRIC; fig|511145.12.peg.661; -.
DR EchoBASE; EB1550; -.
DR eggNOG; COG2921; Bacteria.
DR HOGENOM; CLU_161438_2_1_6; -.
DR InParanoid; P0A8J4; -.
DR OMA; MNTKFDE; -.
DR PhylomeDB; P0A8J4; -.
DR BioCyc; EcoCyc:EG11592-MON; -.
DR EvolutionaryTrace; P0A8J4; -.
DR PRO; PR:P0A8J4; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0034605; P:cellular response to heat; IMP:EcoCyc.
DR HAMAP; MF_00659; UPF0250; 1.
DR InterPro; IPR007454; UPF0250.
DR InterPro; IPR027471; YbeD-like_sf.
DR PANTHER; PTHR38036; PTHR38036; 1.
DR Pfam; PF04359; DUF493; 1.
DR SUPFAM; SSF117991; SSF117991; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..87
FT /note="UPF0250 protein YbeD"
FT /id="PRO_0000209296"
FT STRAND 4..6
FT /evidence="ECO:0007829|PDB:1RWU"
FT STRAND 15..22
FT /evidence="ECO:0007829|PDB:1RWU"
FT HELIX 27..38
FT /evidence="ECO:0007829|PDB:1RWU"
FT STRAND 39..41
FT /evidence="ECO:0007829|PDB:1RWU"
FT STRAND 45..48
FT /evidence="ECO:0007829|PDB:1RWU"
FT STRAND 53..62
FT /evidence="ECO:0007829|PDB:1RWU"
FT HELIX 67..77
FT /evidence="ECO:0007829|PDB:1RWU"
FT STRAND 80..82
FT /evidence="ECO:0007829|PDB:1RWU"
FT STRAND 84..86
FT /evidence="ECO:0007829|PDB:1RWU"
SQ SEQUENCE 87 AA; 9827 MW; 13B14D3B2A6E1F95 CRC64;
MKTKLNELLE FPTPFTYKVM GQALPELVDQ VVEVVQRHAP GDYTPTVKPS SKGNYHSVSI
TINATHIEQV ETLYEELGKI DIVRMVL
