YBEF_ECOLI
ID YBEF_ECOLI Reviewed; 317 AA.
AC P30979; P75727; P77105;
DT 01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 3.
DT 03-AUG-2022, entry version 153.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YbeF;
GN Name=ybeF; OrderedLocusNames=b0629, JW0624;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8444795; DOI=10.1128/jb.175.5.1325-1336.1993;
RA Reed K.E., Cronan J.E. Jr.;
RT "Lipoic acid metabolism in Escherichia coli: sequencing and functional
RT characterization of the lipA and lipB genes.";
RL J. Bacteriol. 175:1325-1336(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA Horiuchi T.;
RT "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 12.7-28.0 min region on the linkage map.";
RL DNA Res. 3:137-155(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RA Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT "Sequence of minutes 4-25 of Escherichia coli.";
RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA66344.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; L07636; AAA66344.1; ALT_FRAME; Genomic_DNA.
DR EMBL; U82598; AAB40829.1; -; Genomic_DNA.
DR EMBL; U00096; AAC73730.2; -; Genomic_DNA.
DR EMBL; AP009048; BAA35272.1; -; Genomic_DNA.
DR PIR; C64797; C64797.
DR RefSeq; NP_415162.4; NC_000913.3.
DR RefSeq; WP_000378026.1; NZ_SSZK01000037.1.
DR AlphaFoldDB; P30979; -.
DR SMR; P30979; -.
DR BioGRID; 4260778; 8.
DR IntAct; P30979; 2.
DR STRING; 511145.b0629; -.
DR PaxDb; P30979; -.
DR PRIDE; P30979; -.
DR DNASU; 945219; -.
DR EnsemblBacteria; AAC73730; AAC73730; b0629.
DR EnsemblBacteria; BAA35272; BAA35272; BAA35272.
DR GeneID; 945219; -.
DR KEGG; ecj:JW0624; -.
DR KEGG; eco:b0629; -.
DR PATRIC; fig|1411691.4.peg.1639; -.
DR EchoBASE; EB1551; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_39_5_6; -.
DR OMA; MTWNESG; -.
DR PhylomeDB; P30979; -.
DR BioCyc; EcoCyc:EG11594-MON; -.
DR PRO; PR:P30979; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR SUPFAM; SSF46785; SSF46785; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..317
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YbeF"
FT /id="PRO_0000105779"
FT DOMAIN 29..86
FT /note="HTH lysR-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00253"
FT DNA_BIND 46..65
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00253"
FT CONFLICT 297
FT /note="Missing (in Ref. 1; AAA66344)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 317 AA; 35960 MW; 27DAC6963541736F CRC64;
MDSNNQIEPC LSRKSSEGKP QIFTTLRNID LNLLTIFEAV YVHKGIVNAA KVLNLTPSAI
SQSIQKLRVI FPDPLFIRKG QGVTPTAFAM HLHEYISQGL ESILGALDIE GSYDKQRTIT
IATTPSVGAL VLPVIYRAIK THYPQLLLRN PPISDAENQL SQFQTDLIID NMFCTNRTVQ
HHVLFTDNMV LICREGNPLL SLEDDRETID NAAHVLLLPE EQNFSGLRQR VQEMFPDRQI
NFTSYNILTI AALVANSDML AIIPSRFYNL FSRCWPLEKL PFPSLNEEQI DFSIHYNKFS
LRDPILHGVI DVIRNAF
