ID   YBFD_ECOLI              Reviewed;         253 AA.
AC   P28916;
DT   01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
DT   01-DEC-1992, sequence version 1.
DT   03-AUG-2022, entry version 125.
DE   RecName: Full=H repeat-associated putative transposase YbfD;
DE   AltName: Full=ORF-H3;
GN   Name=ybfD; OrderedLocusNames=b0706, JW0696;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=K12;
RX   PubMed=8387990; DOI=10.1128/jb.175.10.2799-2808.1993;
RA   Zhao S., Sandt C.H., Feulner G., Vlazny D.A., Gray J.A., Hill C.W.;
RT   "Rhs elements of Escherichia coli K-12: complex composites of shared and
RT   unique components that have different evolutionary histories.";
RL   J. Bacteriol. 175:2799-2808(1993).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA   Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA   Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA   Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA   Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA   Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA   Horiuchi T.;
RT   "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT   the 12.7-28.0 min region on the linkage map.";
RL   DNA Res. 3:137-155(1996).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-23.
RC   STRAIN=O2:HN / ECOR-50 / P97 / UPEC;
RX   PubMed=7868617; DOI=10.1128/jb.177.5.1393-1398.1995;
RA   Zhao S., Hill C.W.;
RT   "Reshuffling of Rhs components to create a new element.";
RL   J. Bacteriol. 177:1393-1398(1995).
CC   -!- SIMILARITY: Belongs to the transposase 11 family. {ECO:0000305}.
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DR   EMBL; L02373; AAC63076.1; -; Genomic_DNA.
DR   EMBL; U00096; AAC73800.1; -; Genomic_DNA.
DR   EMBL; AP009048; BAA35365.1; -; Genomic_DNA.
DR   EMBL; U15125; AAA66213.1; -; Genomic_DNA.
DR   PIR; A64806; A64806.
DR   RefSeq; NP_415234.1; NC_000913.3.
DR   AlphaFoldDB; P28916; -.
DR   BioGRID; 4261600; 155.
DR   IntAct; P28916; 5.
DR   STRING; 511145.b0706; -.
DR   PaxDb; P28916; -.
DR   PRIDE; P28916; -.
DR   EnsemblBacteria; AAC73800; AAC73800; b0706.
DR   EnsemblBacteria; BAA35365; BAA35365; BAA35365.
DR   GeneID; 945176; -.
DR   KEGG; ecj:JW0696; -.
DR   KEGG; eco:b0706; -.
DR   PATRIC; fig|511145.12.peg.736; -.
DR   EchoBASE; EB1486; -.
DR   eggNOG; COG5433; Bacteria.
DR   HOGENOM; CLU_046404_0_0_6; -.
DR   InParanoid; P28916; -.
DR   OMA; HYIVIVK; -.
DR   PhylomeDB; P28916; -.
DR   BioCyc; EcoCyc:EG11524-MON; -.
DR   PRO; PR:P28916; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0004803; F:transposase activity; IEA:InterPro.
DR   GO; GO:0006313; P:transposition, DNA-mediated; IEA:InterPro.
DR   InterPro; IPR002559; Transposase_11.
DR   InterPro; IPR032806; YbfD_N.
DR   Pfam; PF01609; DDE_Tnp_1; 1.
DR   Pfam; PF13808; DDE_Tnp_1_assoc; 1.
PE   3: Inferred from homology;
KW   Reference proteome.
FT   CHAIN           1..253
FT                   /note="H repeat-associated putative transposase YbfD"
FT                   /id="PRO_0000168687"
SQ   SEQUENCE   253 AA;  28865 MW;  72E18F07092FB5F0 CRC64;
     MELKKLMEHI SIIPDYRQAW KVEHKLSDIL LLTICAVISG AEGWEDIEDF GETHPDFLKQ
     YGDFENGIPV HDTIARVVSC ICPAKFHESF INWMLDYHSS DDKDVIAIDG KIHRHSYDKS
     RRKGAIHVIS AFSTMHSLVI GQIKTDKKSN EITAIPELLN MLDIKGKIIK TDAMGCQKDI
     AEKIQKQGGD YLFAVKGNQG RLNKAFEEKF PLKELNNPKH DSYAISEKSH GREETRLHIV
     CDVPDELIDF TFE