YBII_ECOLI
ID YBII_ECOLI Reviewed; 88 AA.
AC P41039;
DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1995, sequence version 1.
DT 03-AUG-2022, entry version 133.
DE RecName: Full=Uncharacterized protein YbiI;
GN Name=ybiI; OrderedLocusNames=b0803, JW0788;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8037924; DOI=10.1266/jjg.69.1;
RA Ohmori H.;
RT "Structural analysis of the rhlE gene of Escherichia coli.";
RL Jpn. J. Genet. 69:1-12(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA Horiuchi T.;
RT "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 12.7-28.0 min region on the linkage map.";
RL DNA Res. 3:137-155(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
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DR EMBL; L02123; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; U00096; AAC73890.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA35469.1; -; Genomic_DNA.
DR PIR; C64817; C64817.
DR RefSeq; NP_415324.1; NC_000913.3.
DR RefSeq; WP_000146343.1; NZ_STEB01000019.1.
DR PDB; 2KGO; NMR; -; A=1-88.
DR PDBsum; 2KGO; -.
DR AlphaFoldDB; P41039; -.
DR BMRB; P41039; -.
DR SMR; P41039; -.
DR BioGRID; 4259954; 15.
DR IntAct; P41039; 13.
DR STRING; 511145.b0803; -.
DR jPOST; P41039; -.
DR PaxDb; P41039; -.
DR PRIDE; P41039; -.
DR EnsemblBacteria; AAC73890; AAC73890; b0803.
DR EnsemblBacteria; BAA35469; BAA35469; BAA35469.
DR GeneID; 945434; -.
DR KEGG; ecj:JW0788; -.
DR KEGG; eco:b0803; -.
DR PATRIC; fig|1411691.4.peg.1475; -.
DR EchoBASE; EB2320; -.
DR eggNOG; COG1734; Bacteria.
DR HOGENOM; CLU_158637_0_1_6; -.
DR InParanoid; P41039; -.
DR OMA; MAGGWAR; -.
DR PhylomeDB; P41039; -.
DR BioCyc; EcoCyc:EG12421-MON; -.
DR EvolutionaryTrace; P41039; -.
DR PRO; PR:P41039; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:1900378; P:positive regulation of secondary metabolite biosynthetic process; IBA:GO_Central.
DR InterPro; IPR020460; Znf_C4-type_bac.
DR InterPro; IPR000962; Znf_DskA_TraR.
DR InterPro; IPR020458; Znf_DskA_TraR_CS.
DR Pfam; PF01258; zf-dskA_traR; 1.
DR PRINTS; PR00618; DKSAZNFINGER.
DR PROSITE; PS01102; ZF_DKSA_1; 1.
DR PROSITE; PS51128; ZF_DKSA_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Metal-binding; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..88
FT /note="Uncharacterized protein YbiI"
FT /id="PRO_0000187551"
FT ZN_FING 39..63
FT /note="dksA C4-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00510"
FT STRAND 3..6
FT /evidence="ECO:0007829|PDB:2KGO"
FT HELIX 9..15
FT /evidence="ECO:0007829|PDB:2KGO"
FT HELIX 18..26
FT /evidence="ECO:0007829|PDB:2KGO"
FT STRAND 32..34
FT /evidence="ECO:0007829|PDB:2KGO"
FT TURN 40..42
FT /evidence="ECO:0007829|PDB:2KGO"
FT HELIX 48..53
FT /evidence="ECO:0007829|PDB:2KGO"
FT HELIX 61..70
FT /evidence="ECO:0007829|PDB:2KGO"
SQ SEQUENCE 88 AA; 9756 MW; B8BF3F51C1BAF060 CRC64;
MASGWANDDA VNEQINSTIE DAIARARGEI PRGESLDECE ECGAPIPQAR REAIPGVRLC
IHCQQEKDLQ KPAYTGYNRR GSKDSQLR
