ID   YBJD_ECOLI              Reviewed;         552 AA.
AC   P75828;
DT   15-JUL-1998, integrated into UniProtKB/Swiss-Prot.
DT   01-FEB-1997, sequence version 1.
DT   03-AUG-2022, entry version 132.
DE   RecName: Full=Uncharacterized protein YbjD;
GN   Name=ybjD; OrderedLocusNames=b0876, JW0860;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA   Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA   Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA   Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA   Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA   Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA   Horiuchi T.;
RT   "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT   the 12.7-28.0 min region on the linkage map.";
RL   DNA Res. 3:137-155(1996).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
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DR   EMBL; U00096; AAC73963.1; -; Genomic_DNA.
DR   EMBL; AP009048; BAA35594.1; -; Genomic_DNA.
DR   PIR; D64826; D64826.
DR   RefSeq; NP_415397.1; NC_000913.3.
DR   RefSeq; WP_000599802.1; NZ_LN832404.1.
DR   AlphaFoldDB; P75828; -.
DR   SMR; P75828; -.
DR   BioGRID; 4260001; 56.
DR   DIP; DIP-11446N; -.
DR   IntAct; P75828; 6.
DR   STRING; 511145.b0876; -.
DR   jPOST; P75828; -.
DR   PaxDb; P75828; -.
DR   PRIDE; P75828; -.
DR   EnsemblBacteria; AAC73963; AAC73963; b0876.
DR   EnsemblBacteria; BAA35594; BAA35594; BAA35594.
DR   GeneID; 945498; -.
DR   KEGG; ecj:JW0860; -.
DR   KEGG; eco:b0876; -.
DR   PATRIC; fig|511145.12.peg.905; -.
DR   EchoBASE; EB3199; -.
DR   eggNOG; COG3593; Bacteria.
DR   HOGENOM; CLU_034845_0_0_6; -.
DR   InParanoid; P75828; -.
DR   OMA; MNMRRVI; -.
DR   PhylomeDB; P75828; -.
DR   BioCyc; EcoCyc:G6459-MON; -.
DR   PRO; PR:P75828; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0000731; P:DNA synthesis involved in DNA repair; IBA:GO_Central.
DR   GO; GO:0006302; P:double-strand break repair; IBA:GO_Central.
DR   CDD; cd01026; TOPRIM_OLD; 1.
DR   Gene3D; 3.40.50.300; -; 1.
DR   InterPro; IPR022602; DUF2813.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR006171; TOPRIM_domain.
DR   InterPro; IPR034139; TOPRIM_OLD.
DR   Pfam; PF11398; DUF2813; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS50880; TOPRIM; 1.
PE   4: Predicted;
KW   ATP-binding; Nucleotide-binding; Reference proteome.
FT   CHAIN           1..552
FT                   /note="Uncharacterized protein YbjD"
FT                   /id="PRO_0000168736"
FT   DOMAIN          379..469
FT                   /note="Toprim"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00995"
FT   BINDING         29..36
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   552 AA;  63589 MW;  969D8AB605C923A0 CRC64;
     MILERVEIVG FRGINRLSLM LEQNNVLIGE NAWGKSSLLD ALTLLLSPES DLYHFERDDF
     WFPPGDINGR EHHLHIILTF RESLPGRHRV RRYRPLEACW TPCTDGYHRI FYRLEGESAE
     DGSVMTLRSF LDKDGHPIDV EDINDQARHL VRLMPVLRLR DARFMRRIRN GTVPNVPNVE
     VTARQLDFLA RELSSHPQNL SDGQIRQGLS AMVQLLEHYF SEQGAGQARY RLMRRRASNE
     QRSWRYLDII NRMIDRPGGR SYRVILLGLF ATLLQAKGTL RLDKDARPLL LIEDPETRLH
     PIMLSVAWHL LNLLPLQRIA TTNSGELLSL TPVEHVCRLV RESSRVAAWR LGPSGLSTED
     SRRISFHIRF NRPSSLFARC WLLVEGETET WVINELARQC GHHFDAEGIK VIEFAQSGLK
     PLVKFARRMG IEWHVLVDGD EAGKKYAATV RSLLNNDREA EREHLTALPA LDMEHFMYRQ
     GFSDVFHRMA QIPENVPMNL RKIISKAIHR SSKPDLAIEV AMEAGRRGVD SVPTLLKKMF
     SRVLWLARGR AD