YC20L_ARATH
ID YC20L_ARATH Reviewed; 197 AA.
AC O80813; Q1ECF8; Q8L9U6;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 14-OCT-2008, sequence version 2.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Ycf20-like protein;
GN OrderedLocusNames=At1g65420; ORFNames=T8F5.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the ycf20 family. {ECO:0000305}.
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DR EMBL; AC004512; AAC27150.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34371.1; -; Genomic_DNA.
DR EMBL; BT025776; ABF83666.1; -; mRNA.
DR EMBL; AY088215; AAM65756.1; -; mRNA.
DR PIR; T02365; T02365.
DR RefSeq; NP_564851.1; NM_105216.5.
DR AlphaFoldDB; O80813; -.
DR STRING; 3702.AT1G65420.1; -.
DR PaxDb; O80813; -.
DR PRIDE; O80813; -.
DR EnsemblPlants; AT1G65420.1; AT1G65420.1; AT1G65420.
DR GeneID; 842853; -.
DR Gramene; AT1G65420.1; AT1G65420.1; AT1G65420.
DR KEGG; ath:AT1G65420; -.
DR Araport; AT1G65420; -.
DR TAIR; locus:2206305; AT1G65420.
DR eggNOG; ENOG502RZMD; Eukaryota.
DR HOGENOM; CLU_090160_1_1_1; -.
DR InParanoid; O80813; -.
DR OMA; MINVFHR; -.
DR OrthoDB; 1462632at2759; -.
DR PhylomeDB; O80813; -.
DR PRO; PR:O80813; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O80813; baseline and differential.
DR Genevisible; O80813; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0010196; P:nonphotochemical quenching; IMP:TAIR.
DR InterPro; IPR007572; Uncharacterised_Ycf20.
DR PANTHER; PTHR33787; PTHR33787; 1.
DR Pfam; PF04483; DUF565; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..197
FT /note="Ycf20-like protein"
FT /id="PRO_0000217330"
FT TRANSMEM 113..133
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 138..158
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 173..193
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CONFLICT 27
FT /note="F -> L (in Ref. 4; AAM65756)"
FT /evidence="ECO:0000305"
FT CONFLICT 31..33
FT /note="IKA -> RKV (in Ref. 4; AAM65756)"
FT /evidence="ECO:0000305"
FT CONFLICT 102
FT /note="G -> A (in Ref. 4; AAM65756)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 197 AA; 21397 MW; C7D9C403A27CFD2B CRC64;
MACQIQASRV FPVLEIEKGL SFMINVFHRR IKASSITLTS FPYPMKSFQI RRPNRKIAFA
LDTGSSIPGD SGEGQEMNGD RTGLGSTRLG RIAIAGGKQL LGKINSARKN FPMKIFLLLL
GFYTANALAT ILGQTGDWDV LVAGIVVAAI EGIGMLMYKK PSSSMFSGKL QSFVVFMNFW
KAGVCLGLFV DAFKLGS