YCDZ_ECOLI
ID YCDZ_ECOLI Reviewed; 163 AA.
AC P75916;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 27-APR-2001, sequence version 2.
DT 03-AUG-2022, entry version 127.
DE RecName: Full=Inner membrane protein YcdZ;
GN Name=ycdZ; OrderedLocusNames=b1036, JW5147;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA Horiuchi T.;
RT "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 12.7-28.0 min region on the linkage map.";
RL DNA Res. 3:137-155(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
CC -!- SIMILARITY: To E.coli YahC. {ECO:0000305}.
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DR EMBL; U00096; AAC74120.2; -; Genomic_DNA.
DR EMBL; AP009048; BAA35817.2; -; Genomic_DNA.
DR PIR; A64846; A64846.
DR RefSeq; NP_415554.4; NC_000913.3.
DR RefSeq; WP_001300785.1; NZ_SSZK01000090.1.
DR AlphaFoldDB; P75916; -.
DR BioGRID; 4260063; 15.
DR STRING; 511145.b1036; -.
DR PaxDb; P75916; -.
DR PRIDE; P75916; -.
DR EnsemblBacteria; AAC74120; AAC74120; b1036.
DR EnsemblBacteria; BAA35817; BAA35817; BAA35817.
DR GeneID; 58463385; -.
DR GeneID; 945617; -.
DR KEGG; ecj:JW5147; -.
DR KEGG; eco:b1036; -.
DR PATRIC; fig|511145.12.peg.1075; -.
DR EchoBASE; EB3631; -.
DR eggNOG; ENOG502ZBVY; Bacteria.
DR HOGENOM; CLU_104628_0_0_6; -.
DR OMA; WGWVAIS; -.
DR PhylomeDB; P75916; -.
DR BioCyc; EcoCyc:G6542-MON; -.
DR PRO; PR:P75916; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR InterPro; IPR009476; DUF1097.
DR Pfam; PF06496; DUF1097; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..163
FT /note="Inner membrane protein YcdZ"
FT /id="PRO_0000168808"
FT TOPO_DOM 1..2
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 3..23
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 24
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 25..45
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 46..48
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 49..69
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 70..71
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 72..92
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 93..98
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 99..119
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 120..122
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 123..143
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 144..163
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
SQ SEQUENCE 163 AA; 17074 MW; 999BE93A1FE35B68 CRC64;
MNILLSIAIT TGILSGIWGW VAVSLGLLSW AGFLGCTAYF ACPQGGLKGL AISAATLLSG
VVWAMVIIYG SALAPHLEIL GYVITGIVAF LMCIQAKQLL LSFVPGTFIG ACATFAGQGD
WKLVLPSLAL GLIFGYAMKN SGLWLAARSA KTAHREQEIK NKA
