ID   YCED1_ARATH             Reviewed;         321 AA.
AC   Q9LT27;
DT   15-MAR-2017, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   03-AUG-2022, entry version 118.
DE   RecName: Full=Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic {ECO:0000305};
DE   AltName: Full=23S rRNA accumulation protein YCED {ECO:0000250|UniProtKB:P0AB28};
DE   AltName: Full=Protein DUF177A {ECO:0000303|PubMed:27574185};
DE   Flags: Precursor;
GN   OrderedLocusNames=At3g19810 {ECO:0000312|Araport:AT3G19810};
GN   ORFNames=MPN9.5 {ECO:0000312|EMBL:BAB01295.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702 {ECO:0000312|EMBL:BAB01295.1};
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA   Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT   features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT   clones.";
RL   DNA Res. 7:131-135(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3] {ECO:0000312|EMBL:ABG48473.1}
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Columbia;
RA   Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [6]
RP   FUNCTION, DISRUPTION PHENOTYPE, AND SUBCELLULAR LOCATION.
RX   PubMed=27574185; DOI=10.1093/jxb/erw311;
RA   Yang J., Suzuki M., McCarty D.R.;
RT   "Essential role of conserved DUF177A protein in plastid 23S rRNA
RT   accumulation and plant embryogenesis.";
RL   J. Exp. Bot. 67:5447-5460(2016).
CC   -!- FUNCTION: Plays a role in synthesis, processing and/or stability of 23S
CC       rRNA. Required for embryogenesis. {ECO:0000269|PubMed:27574185}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast stroma, chloroplast nucleoid
CC       {ECO:0000269|PubMed:27574185}.
CC   -!- DISRUPTION PHENOTYPE: Embryo lethal. {ECO:0000269|PubMed:27574185}.
CC   -!- SIMILARITY: Belongs to the DUF177 domain family. {ECO:0000305}.
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DR   EMBL; AB025631; BAB01295.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE76292.1; -; Genomic_DNA.
DR   EMBL; CP002686; ANM65252.1; -; Genomic_DNA.
DR   EMBL; AY088199; AAM65741.1; -; mRNA.
DR   EMBL; BT026117; ABG48473.1; -; mRNA.
DR   EMBL; AK226924; BAE98996.1; -; mRNA.
DR   RefSeq; NP_001327235.1; NM_001338419.1.
DR   RefSeq; NP_566649.1; NM_112871.4.
DR   AlphaFoldDB; Q9LT27; -.
DR   STRING; 3702.AT3G19810.1; -.
DR   PaxDb; Q9LT27; -.
DR   PRIDE; Q9LT27; -.
DR   ProteomicsDB; 242303; -.
DR   EnsemblPlants; AT3G19810.1; AT3G19810.1; AT3G19810.
DR   EnsemblPlants; AT3G19810.2; AT3G19810.2; AT3G19810.
DR   GeneID; 821518; -.
DR   Gramene; AT3G19810.1; AT3G19810.1; AT3G19810.
DR   Gramene; AT3G19810.2; AT3G19810.2; AT3G19810.
DR   KEGG; ath:AT3G19810; -.
DR   Araport; AT3G19810; -.
DR   TAIR; locus:2092266; AT3G19810.
DR   eggNOG; ENOG502QUUH; Eukaryota.
DR   HOGENOM; CLU_074940_0_0_1; -.
DR   InParanoid; Q9LT27; -.
DR   OMA; CSCNAEK; -.
DR   OrthoDB; 1318962at2759; -.
DR   PhylomeDB; Q9LT27; -.
DR   PRO; PR:Q9LT27; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LT27; baseline and differential.
DR   GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR   GO; GO:0042644; C:chloroplast nucleoid; IEA:UniProtKB-SubCell.
DR   GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
DR   InterPro; IPR003772; YceD.
DR   Pfam; PF02620; YceD; 1.
PE   2: Evidence at transcript level;
KW   Chloroplast; Plastid; Reference proteome; Ribosome biogenesis;
KW   Transit peptide.
FT   TRANSIT         1..32
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           33..321
FT                   /note="Large ribosomal RNA subunit accumulation protein
FT                   YCED homolog 1, chloroplastic"
FT                   /id="PRO_0000439065"
SQ   SEQUENCE   321 AA;  36051 MW;  DE187D93AF09ED7D CRC64;
     MSLVCSLSCV APLPQTKQSR PSFLKLETCT LSLSSPAGYP NFTTGIRKHI SYLFTEPIKL
     PRLAKSRILV SQESFTETST IDMDWEDQEE IEDTGSPWEG SVMYRRNASV THVEYCTTLE
     RLGLGRLSTD VSKKRASAMG LRVTKDVKDY PDGTPVQVSV DVIRKKKKLR LDGIVRTVIT
     LGCNRCGEST GESIFSNFSL LLTEEPVEEP DVIDLGFTFG NDKEEGEDDD DNDDSWIDWE
     DKLHFPPEVK EIDISKHIRD LVHLEITITA ICDSACKGMC LKCGANLNKR KCDCGREEKD
     KGYGPLGNLR EQMQQKEGLR N