YCED1_MAIZE
ID YCED1_MAIZE Reviewed; 293 AA.
AC A0A1D6HQ92;
DT 15-MAR-2017, integrated into UniProtKB/Swiss-Prot.
DT 30-NOV-2016, sequence version 1.
DT 25-MAY-2022, entry version 25.
DE RecName: Full=Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic {ECO:0000305};
DE AltName: Full=23S rRNA accumulation protein YCED {ECO:0000250|UniProtKB:P0AB28};
DE AltName: Full=Large ribosomal RNA subunit accumulation protein YCED {ECO:0000250|UniProtKB:P0AB28};
DE AltName: Full=Protein DUF177A {ECO:0000303|PubMed:27574185};
DE Flags: Precursor;
GN ORFNames=GRMZM2G433025 {ECO:0000305|PubMed:27574185};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73;
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2]
RP FUNCTION, DISRUPTION PHENOTYPE, AND TISSUE SPECIFICITY.
RC STRAIN=cv. B73, and cv. Wisconsin 22;
RX PubMed=27574185; DOI=10.1093/jxb/erw311;
RA Yang J., Suzuki M., McCarty D.R.;
RT "Essential role of conserved DUF177A protein in plastid 23S rRNA
RT accumulation and plant embryogenesis.";
RL J. Exp. Bot. 67:5447-5460(2016).
CC -!- FUNCTION: Plays a role in synthesis, processing and/or stability of 23S
CC rRNA. Required for embryogenesis. May be involved in RPL23 transcript
CC levels regulation in non-photosynthetic plastids.
CC {ECO:0000269|PubMed:27574185}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Highly expressed in shoots and leaves. Detected in
CC roots, embryos and endosperm. {ECO:0000269|PubMed:27574185}.
CC -!- DISRUPTION PHENOTYPE: Embryonic lethality when homozygous in non-
CC permissive genetic background (cv. Wisconsin 22) or albino seedlings in
CC permissive background (cv. B73). {ECO:0000269|PubMed:27574185}.
CC -!- SIMILARITY: Belongs to the DUF177 domain family. {ECO:0000305}.
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DR RefSeq; XP_008646451.1; XM_008648229.1.
DR AlphaFoldDB; A0A1D6HQ92; -.
DR STRING; 4577.GRMZM2G433025_P01; -.
DR EnsemblPlants; Zm00001eb259480_T001; Zm00001eb259480_P001; Zm00001eb259480.
DR EnsemblPlants; Zm00001eb259480_T002; Zm00001eb259480_P002; Zm00001eb259480.
DR GeneID; 103627916; -.
DR Gramene; Zm00001eb259480_T001; Zm00001eb259480_P001; Zm00001eb259480.
DR Gramene; Zm00001eb259480_T002; Zm00001eb259480_P002; Zm00001eb259480.
DR MaizeGDB; 9035558; -.
DR eggNOG; ENOG502QUUH; Eukaryota.
DR OMA; QIFRNNM; -.
DR OrthoDB; 1318962at2759; -.
DR Proteomes; UP000007305; Chromosome 5.
DR ExpressionAtlas; A0A1D6HQ92; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
DR InterPro; IPR003772; YceD.
DR Pfam; PF02620; YceD; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribosome biogenesis;
KW Transit peptide.
FT TRANSIT 1..42
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 43..293
FT /note="Large ribosomal RNA subunit accumulation protein
FT YCED homolog 1, chloroplastic"
FT /id="PRO_0000439067"
SQ SEQUENCE 293 AA; 31743 MW; F770A9687C5CC4ED CRC64;
MYYPQPTVSL AAAVALLRPS LRRHSQRASS LLRSSTPPPW VSARRRTAVS DDFFTVELDA
TGVEPEPDSI DDGLPSPWEG AVVYRRDAAV QHLEYASTLE RLGLGDLSSP DSRARAADLG
LAGGTLDSTG AQPRTPVLVS VDVTRRRGRL RLDGIVRTVI TLGCFRCAEP APQGIFANFS
LLLTEDPVEE EPDLGTIFQE DDDKGGASLA CAMDGDQDID WDDRLHFPAA DKEIDISKHI
RDMIHLEITL DAVCNPNCKG LCLTCGANLN TTSSCTCKPR NVQGLSPLKG VFK
